Analysis of interatomic Contacts of Structural Units in PDB entry:
6GNG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GNG entry

There are 2 chains in PDB entry 6GNG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 18ILE 542
B
 GLU 17ILE 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6GNG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 52Right-handed alpha
Helix 2
AA2
A
104 109Right-handed alpha
Helix 3
AA3
A
130 149Right-handed alpha
Helix 4
AA4
A
170 173Right-handed 310
Helix 5
AA5
A
174 183Right-handed alpha
Helix 6
AA6
A
208 216Right-handed 310
Helix 7
AA7
A
221 226Right-handed alpha
Helix 8
AA8
A
254 263Right-handed alpha
Helix 9
AA9
A
270 279Right-handed alpha
Helix 10
AB1
A
287 295Right-handed alpha
Helix 11
AB2
A
324 341Right-handed alpha
Helix 12
AB3
A
362 369Right-handed alpha
Helix 13
AB4
A
369 375Right-handed alpha
Helix 14
AB5
A
388 397Right-handed alpha
Helix 15
AB6
A
397 402Right-handed alpha
Helix 16
AB7
A
413 424Right-handed alpha
Helix 17
AB8
A
438 446Right-handed alpha
Helix 18
AB9
A
455 462Right-handed alpha
Helix 19
AC1
A
487 490Right-handed 310
Helix 20
AC2
A
491 504Right-handed alpha
Helix 21
AC3
A
508 521Right-handed alpha
Helix 22
AC4
A
524 541Right-handed alpha
Helix 23
AC5
B
36 52Right-handed alpha
Helix 24
AC6
B
104 109Right-handed alpha
Helix 25
AC7
B
130 149Right-handed alpha
Helix 26
AC8
B
170 173Right-handed 310
Helix 27
AC9
B
174 183Right-handed alpha
Helix 28
AD1
B
208 216Right-handed 310
Helix 29
AD2
B
221 226Right-handed alpha
Helix 30
AD3
B
254 263Right-handed alpha
Helix 31
AD4
B
270 279Right-handed alpha
Helix 32
AD5
B
287 295Right-handed alpha
Helix 33
AD6
B
324 341Right-handed alpha
Helix 34
AD7
B
362 369Right-handed alpha
Helix 35
AD8
B
369 375Right-handed alpha
Helix 36
AD9
B
388 397Right-handed alpha
Helix 37
AE1
B
397 402Right-handed alpha
Helix 38
AE2
B
413 424Right-handed alpha
Helix 39
AE3
B
438 446Right-handed alpha
Helix 40
AE4
B
455 462Right-handed alpha
Helix 41
AE5
B
487 490Right-handed 310
Helix 42
AE6
B
491 504Right-handed alpha
Helix 43
AE7
B
508 521Right-handed alpha
Helix 44
AE8
B
524 541Right-handed alpha
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There are 8 sheets in PDB entry 6GNG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 80first strand
Strand 2
A
83 94anti-parallel
Strand 3
A
97 103anti-parallel
Strand 4
A
55 61parallel
Strand 5
A
21 25parallel
Strand 6
A
163 168parallel
Strand 7
A
194 198parallel
Strand 8
A
265 268parallel
Strand 9
A
296 298parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
157 158anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 231first strand
Strand 2
A
245 252anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 409first strand
Strand 2
A
380 384parallel
Strand 3
A
350 354parallel
Strand 4
A
426 429parallel
Strand 5
A
449 453parallel
Strand 6
A
468 470parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 80first strand
Strand 2
B
83 94anti-parallel
Strand 3
B
97 103anti-parallel
Strand 4
B
55 61parallel
Strand 5
B
21 25parallel
Strand 6
B
163 168parallel
Strand 7
B
194 198parallel
Strand 8
B
265 268parallel
Strand 9
B
296 298parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
157 158anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 231first strand
Strand 2
B
245 252anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
406 409first strand
Strand 2
B
380 384parallel
Strand 3
B
350 354parallel
Strand 4
B
426 429parallel
Strand 5
B
449 453parallel
Strand 6
B
468 470parallel
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