Analysis of interatomic Contacts of Structural Units in PDB entry:
6GNH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GNH entry

There is 1 chain in PDB entry 6GNH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11LEU 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6GNH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
23 29Right-handed alpha
Helix 3
AA3
A
41 45Right-handed 310
Helix 4
AA4
A
65 80Right-handed alpha
Helix 5
AA5
A
93 102Right-handed alpha
Helix 6
AA6
A
107 109Right-handed 310
Helix 7
AA7
A
138 147Right-handed alpha
Helix 8
AA8
A
150 156Right-handed alpha
Helix 9
AA9
A
173 176Right-handed 310
Helix 10
AB1
A
179 194Right-handed alpha
Helix 11
AB2
A
223 230Right-handed alpha
Helix 12
AB3
A
236 241Right-handed alpha
Helix 13
AB4
A
244 254Right-handed alpha
Helix 14
AB5
A
268 270Right-handed 310
Helix 15
AB6
A
271 284Right-handed alpha
Helix 16
AB7
A
293 302Right-handed alpha
Helix 17
AB8
A
355 370Right-handed alpha
Helix 18
AB9
A
382 387Right-handed 310
Helix 19
AC1
A
412 416Right-handed 310
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There are 2 sheets in PDB entry 6GNH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
111 116anti-parallel
Strand 3
A
122 134anti-parallel
Strand 4
A
161 171anti-parallel
Strand 5
A
200 204parallel
Strand 6
A
393 404anti-parallel
Strand 7
A
213 221anti-parallel
Strand 8
A
374 378anti-parallel
Strand 9
A
340 351parallel
Strand 10
A
318 332anti-parallel
Strand 11
A
308 315anti-parallel
Strand 12
A
264 266anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
318 332anti-parallel
Strand 3
A
340 351anti-parallel
Strand 4
A
374 378parallel
Strand 5
A
213 221anti-parallel
Strand 6
A
393 404anti-parallel
Strand 7
A
200 204anti-parallel
Strand 8
A
161 171parallel
Strand 9
A
122 134anti-parallel
Strand 10
A
289 291anti-parallel
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