Analysis of interatomic Contacts of Structural Units in PDB entry:
6GNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GNI entry

There are 3 chains in PDB entry 6GNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ALA 768
E
 ARG 133LYS 926
B
 HIS 23TYR 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 6GNI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
22 29Right-handed alpha
Helix 3
AA3
A
102 107Right-handed alpha
Helix 4
AA4
A
133 149Right-handed alpha
Helix 5
AA5
A
189 199Right-handed alpha
Helix 6
AA6
A
223 228Right-handed 310
Helix 7
AA7
A
231 245Right-handed alpha
Helix 8
AA8
A
261 277Right-handed alpha
Helix 9
AA9
A
310 316Right-handed alpha
Helix 10
AB1
A
321 340Right-handed alpha
Helix 11
AB2
A
354 359Right-handed alpha
Helix 12
AB3
A
359 364Right-handed alpha
Helix 13
AB4
A
377 387Right-handed alpha
Helix 14
AB5
A
516 522Right-handed alpha
Helix 15
AB6
A
524 541Right-handed alpha
Helix 16
AB7
A
544 564Right-handed alpha
Helix 17
AB8
A
582 592Right-handed alpha
Helix 18
AB9
A
602 614Right-handed alpha
Helix 19
AC1
A
617 626Right-handed alpha
Helix 20
AC2
A
644 648Right-handed 310
Helix 21
AC3
A
667 677Right-handed alpha
Helix 22
AC4
A
678 681Right-handed 310
Helix 23
AC5
A
685 703Right-handed alpha
Helix 24
AC6
A
718 720Right-handed 310
Helix 25
AC7
A
721 726Right-handed alpha
Helix 26
AC8
A
751 764Right-handed alpha
Helix 27
AC9
E
152 156Right-handed 310
Helix 28
AD1
E
164 168Right-handed 310
Helix 29
AD2
E
192 200Right-handed alpha
Helix 30
AD3
E
263 267Right-handed 310
Helix 31
AD4
E
273 279Right-handed 310
Helix 32
AD5
E
280 285Right-handed alpha
Helix 33
AD6
E
293 297Right-handed 310
Helix 34
AD7
E
313 319Right-handed alpha
Helix 35
AD8
E
320 332Right-handed alpha
Helix 36
AD9
E
399 414Right-handed alpha
Helix 37
AE1
E
423 436Right-handed alpha
Helix 38
AE2
E
470 476Right-handed alpha
Helix 39
AE3
E
481 494Right-handed alpha
Helix 40
AE4
E
508 518Right-handed alpha
Helix 41
AE5
E
533 550Right-handed alpha
Helix 42
AE6
E
638 645Right-handed alpha
Helix 43
AE7
E
647 666Right-handed alpha
Helix 44
AE8
E
668 690Right-handed alpha
Helix 45
AE9
E
706 708Right-handed 310
Helix 46
AF1
E
709 719Right-handed alpha
Helix 47
AF2
E
729 743Right-handed alpha
Helix 48
AF3
E
744 753Right-handed alpha
Helix 49
AF4
E
818 822Right-handed 310
Helix 50
AF5
E
849 859Right-handed alpha
Helix 51
AF6
E
889 901Right-handed alpha
Helix 52
AF7
E
912 925Right-handed alpha
Helix 53
AF8
B
35 46Right-handed alpha
Helix 54
AF9
B
77 88Right-handed 310
Helix 55
AG1
B
102 104Right-handed 310
Helix 56
AG2
B
105 118Right-handed alpha
Helix 57
AG3
B
141 149Right-handed alpha
Helix 58
AG4
B
178 187Right-handed alpha
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There are 16 sheets in PDB entry 6GNI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
33 37anti-parallel
Strand 3
A
456 462anti-parallel
Strand 4
A
412 418anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
499 512parallel
Strand 3
A
109 117anti-parallel
Strand 4
A
48 49parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
499 512parallel
Strand 3
A
484 495anti-parallel
Strand 4
A
399 408anti-parallel
Strand 5
A
444 450anti-parallel
Strand 6
A
422 423anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
77 79anti-parallel
Strand 3
A
86 88anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
156 162anti-parallel
Strand 3
A
123 129parallel
Strand 4
A
282 288parallel
Strand 5
A
341 348parallel
Strand 6
A
369 372parallel
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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
156 162anti-parallel
Strand 3
A
165 170anti-parallel
Strand 4
A
178 183anti-parallel
Strand 5
E
374 378parallel
Strand 6
E
354 358anti-parallel
Strand 7
E
347 350anti-parallel
Strand 8
E
306 311parallel
Strand 9
E
440 446parallel
Strand 10
E
495 503parallel
Strand 11
E
523 527parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 567first strand
Strand 2
A
570 575anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
639 640first strand
Strand 2
A
628 632anti-parallel
Strand 3
A
653 657anti-parallel
Strand 4
A
661 666anti-parallel
Strand 5
A
710 715parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
140 142first strand
Strand 2
E
702 704anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
182 184first strand
Strand 2
E
204 207anti-parallel
Strand 3
E
594 600anti-parallel
Strand 4
E
566 572anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
189 190first strand
Strand 2
E
623 636parallel
Strand 3
E
287 291anti-parallel
Strand 4
E
222 223parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
189 190first strand
Strand 2
E
623 636parallel
Strand 3
E
608 619anti-parallel
Strand 4
E
553 562anti-parallel
Strand 5
E
582 588anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
243 245first strand
Strand 2
E
250 252anti-parallel
Strand 3
E
259 261anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
344 345first strand
Strand 2
E
394 395anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
755 758first strand
Strand 2
E
799 803anti-parallel
Strand 3
E
807 812anti-parallel
Strand 4
E
870 874parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
69 73anti-parallel
Strand 3
B
25 29parallel
Strand 4
B
93 99parallel
Strand 5
B
127 132parallel
Strand 6
B
166 171parallel
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