Analysis of interatomic Contacts of Structural Units in PDB entry:
6GNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GNJ entry

There are 3 chains in PDB entry 6GNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3GLU 233
B
 MET 3SER 232
C
 GLY 232ALA 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6GNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 18Right-handed alpha
Helix 2
AA2
A
20 33Right-handed alpha
Helix 3
AA3
A
39 71Right-handed alpha
Helix 4
AA4
A
76 106Right-handed alpha
Helix 5
AA5
A
106 111Right-handed alpha
Helix 6
AA6
A
113 135Right-handed alpha
Helix 7
AA7
A
137 162Right-handed alpha
Helix 8
AA8
A
166 183Right-handed alpha
Helix 9
AA9
A
186 204Right-handed alpha
Helix 10
AB1
A
205 208Right-handed 310
Helix 11
AB2
A
212 231Right-handed alpha
Helix 12
AB3
B
4 18Right-handed alpha
Helix 13
AB4
B
20 33Right-handed alpha
Helix 14
AB5
B
39 71Right-handed alpha
Helix 15
AB6
B
74 106Right-handed alpha
Helix 16
AB7
B
106 111Right-handed alpha
Helix 17
AB8
B
113 135Right-handed alpha
Helix 18
AB9
B
137 162Right-handed alpha
Helix 19
AC1
B
166 183Right-handed alpha
Helix 20
AC2
B
186 204Right-handed alpha
Helix 21
AC3
B
214 231Right-handed alpha
Helix 22
AC4
C
233 246Right-handed alpha
Helix 23
AC5
C
246 251Right-handed alpha
Helix 24
AC6
C
262 275Right-handed alpha
Helix 25
AC7
C
276 286Right-handed alpha
Helix 26
AC8
C
291 309Right-handed alpha
Helix 27
AC9
C
325 329Right-handed 310
Helix 28
AD1
C
347 353Right-handed alpha
Helix 29
AD2
C
371 373Right-handed 310
Helix 30
AD3
C
375 379Right-handed 310
Helix 31
AD4
C
411 413Right-handed 310
Helix 32
AD5
C
421 426Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6GNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
315 321first strand
Strand 2
C
358 364anti-parallel
Strand 3
C
403 409parallel
Strand 4
C
389 397anti-parallel
Strand 5
C
335 337anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
342 345first strand
Strand 2
C
381 384anti-parallel
Strand 3
C
367 369anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il