Analysis of interatomic Contacts of Structural Units in PDB entry:
6GNN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GNN entry

There are 2 chains in PDB entry 6GNN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3SER 232
C
 ASP 234THR 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 6GNN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 18Right-handed alpha
Helix 2
AA2
A
20 34Right-handed alpha
Helix 3
AA3
A
39 68Right-handed alpha
Helix 4
AA4
A
78 107Right-handed alpha
Helix 5
AA5
A
115 132Right-handed alpha
Helix 6
AA6
A
137 161Right-handed alpha
Helix 7
AA7
A
166 183Right-handed alpha
Helix 8
AA8
A
186 203Right-handed alpha
Helix 9
AA9
A
212 231Right-handed alpha
Helix 10
AB1
C
235 243Right-handed alpha
Helix 11
AB2
C
246 251Right-handed alpha
Helix 12
AB3
C
262 274Right-handed alpha
Helix 13
AB4
C
277 285Right-handed alpha
Helix 14
AB5
C
286 288Right-handed 310
Helix 15
AB6
C
291 309Right-handed alpha
Helix 16
AB7
C
347 352Right-handed alpha
Helix 17
AB8
C
422 428Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6GNN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
318 321first strand
Strand 2
C
359 362anti-parallel
Strand 3
C
404 407parallel
Strand 4
C
395 396anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
335 337first strand
Strand 2
C
390 392anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
342 343first strand
Strand 2
C
383 385anti-parallel
Strand 3
C
369 370anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il