Analysis of interatomic Contacts of Structural Units in PDB entry:
6GO1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GO1 entry

There are 2 chains in PDB entry 6GO1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 50	LYS 367
B	THR 50	LYS 367

There are 31 helices in PDB entry 6GO1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	113	116	Right-handed 310
Helix 2	AA2	A	167	169	Right-handed 310
Helix 3	AA3	A	173	187	Right-handed alpha
Helix 4	AA4	A	193	203	Right-handed 310
Helix 5	AA5	A	215	217	Right-handed 310
Helix 6	AA6	A	218	229	Right-handed alpha
Helix 7	AA7	A	243	246	Right-handed 310
Helix 8	AA8	A	253	263	Right-handed alpha
Helix 9	AA9	A	277	281	Right-handed 310
Helix 10	AB1	A	283	288	Right-handed alpha
Helix 11	AB2	A	288	300	Right-handed alpha
Helix 12	AB3	A	309	312	Right-handed 310
Helix 13	AB4	A	314	322	Right-handed alpha
Helix 14	AB5	A	343	347	Right-handed 310
Helix 15	AB6	A	358	366	Right-handed alpha
Helix 16	AB7	B	101	105	Right-handed 310
Helix 17	AB8	B	113	116	Right-handed 310
Helix 18	AB9	B	167	169	Right-handed 310
Helix 19	AC1	B	173	187	Right-handed alpha
Helix 20	AC2	B	193	202	Right-handed 310
Helix 21	AC3	B	215	217	Right-handed 310
Helix 22	AC4	B	218	229	Right-handed alpha
Helix 23	AC5	B	243	246	Right-handed 310
Helix 24	AC6	B	253	263	Right-handed alpha
Helix 25	AC7	B	277	281	Right-handed 310
Helix 26	AC8	B	283	288	Right-handed alpha
Helix 27	AC9	B	288	300	Right-handed alpha
Helix 28	AD1	B	309	312	Right-handed 310
Helix 29	AD2	B	314	325	Right-handed alpha
Helix 30	AD3	B	343	347	Right-handed 310
Helix 31	AD4	B	358	367	Right-handed alpha

There are 12 sheets in PDB entry 6GO1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	65	71	anti-parallel
Strand 3	A	108	111	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	99	first strand
Strand 2	A	79	86	anti-parallel
Strand 3	A	120	129	anti-parallel
Strand 4	A	135	145	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	191	first strand
Strand 2	A	206	213	parallel
Strand 3	A	237	241	parallel
Strand 4	A	266	270	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	191	first strand
Strand 2	A	206	213	parallel
Strand 3	A	151	154	parallel
Strand 4	A	351	352	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	171	172	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	307	first strand
Strand 2	A	327	329	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	65	71	anti-parallel
Strand 3	B	108	111	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	99	first strand
Strand 2	B	79	86	anti-parallel
Strand 3	B	120	129	anti-parallel
Strand 4	B	135	145	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	192	first strand
Strand 2	B	206	213	parallel
Strand 3	B	237	241	parallel
Strand 4	B	266	270	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	192	first strand
Strand 2	B	206	213	parallel
Strand 3	B	151	154	parallel
Strand 4	B	351	352	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	171	172	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	307	first strand
Strand 2	B	327	329	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GO1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GO1