Analysis of interatomic Contacts of Structural Units in PDB entry:
6GOC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GOC entry

There is 1 chain in PDB entry 6GOC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 20ASP 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6GOC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
31 43Right-handed alpha
Helix 3
AA3
A
59 64Right-handed 310
Helix 4
AA4
A
68 78Right-handed alpha
Helix 5
AA5
A
103 116Right-handed alpha
Helix 6
AA6
A
120 140Right-handed alpha
Helix 7
AA7
A
140 146Right-handed alpha
Helix 8
AA8
A
204 207Right-handed 310
Helix 9
AA9
A
208 221Right-handed alpha
Helix 10
AB1
A
232 234Right-handed 310
Helix 11
AB2
A
235 240Right-handed alpha
Helix 12
AB3
A
241 245Right-handed 310
Helix 13
AB4
A
247 268Right-handed alpha
Helix 14
AB5
A
282 295Right-handed alpha
Helix 15
AB6
A
315 320Right-handed alpha
Helix 16
AB7
A
322 329Right-handed 310
Helix 17
AB8
A
331 338Right-handed alpha
Helix 18
AB9
A
352 357Right-handed 310
Helix 19
AC1
A
360 371Right-handed alpha
Helix 20
AC2
A
372 373Right-handed 310
Helix 21
AC3
A
374 376Right-handed 310
Helix 22
AC4
A
391 407Right-handed alpha
Helix 23
AC5
A
409 413Right-handed 310
Helix 24
AC6
A
414 418Right-handed 310
Helix 25
AC7
A
422 427Right-handed 310
Helix 26
AC8
A
443 449Right-handed alpha
Helix 27
AC9
A
452 461Right-handed alpha
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There are 5 sheets in PDB entry 6GOC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
56 57anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
91 96parallel
Strand 3
A
82 86anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
164 172anti-parallel
Strand 3
A
159 160anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
164 172anti-parallel
Strand 3
A
178 186anti-parallel
Strand 4
A
223 227anti-parallel
Strand 5
A
192 197parallel
Strand 6
A
271 281parallel
Strand 7
A
300 304parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 349first strand
Strand 2
A
378 383parallel
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