Analysis of interatomic Contacts of Structural Units in PDB entry:
6GP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GP5 entry

There are 2 chains in PDB entry 6GP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 38LYS 351
B
 GLU 41LYS 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6GP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 59Right-handed alpha
Helix 2
AA2
A
74 84Right-handed alpha
Helix 3
AA3
A
102 116Right-handed alpha
Helix 4
AA4
A
139 143Right-handed 310
Helix 5
AA5
A
146 168Right-handed alpha
Helix 6
AA6
A
194 213Right-handed alpha
Helix 7
AA7
A
227 240Right-handed alpha
Helix 8
AA8
A
255 260Right-handed alpha
Helix 9
AA9
A
264 285Right-handed alpha
Helix 10
AB1
A
299 311Right-handed alpha
Helix 11
AB2
A
345 351Right-handed 310
Helix 12
AB3
B
52 60Right-handed alpha
Helix 13
AB4
B
74 83Right-handed alpha
Helix 14
AB5
B
102 116Right-handed alpha
Helix 15
AB6
B
139 143Right-handed 310
Helix 16
AB7
B
146 168Right-handed alpha
Helix 17
AB8
B
194 213Right-handed alpha
Helix 18
AB9
B
227 240Right-handed alpha
Helix 19
AC1
B
254 260Right-handed alpha
Helix 20
AC2
B
264 285Right-handed alpha
Helix 21
AC3
B
299 311Right-handed alpha
Helix 22
AC4
B
328 333Right-handed alpha
Helix 23
AC5
B
345 351Right-handed 310
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There are 7 sheets in PDB entry 6GP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
87 92parallel
Strand 3
A
119 124parallel
Strand 4
A
174 177parallel
Strand 5
A
217 222parallel
Strand 6
A
247 252parallel
Strand 7
A
288 293parallel
Strand 8
A
317 321parallel
Strand 9
A
45 49parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
72 73anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
190 191anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 339first strand
Strand 2
A
342 343anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 49first strand
Strand 2
B
87 92parallel
Strand 3
B
119 124parallel
Strand 4
B
174 177parallel
Strand 5
B
217 222parallel
Strand 6
B
247 252parallel
Strand 7
B
288 293parallel
Strand 8
B
317 321parallel
Strand 9
B
45 49parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 185first strand
Strand 2
B
190 191anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 339first strand
Strand 2
B
342 343anti-parallel
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