Analysis of interatomic Contacts of Structural Units in PDB entry:
6GPK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GPK entry

There are 4 chains in PDB entry 6GPK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 23	ALA 372
B	ARG 23	ALA 372
C	ARG 23	ALA 372
D	ARG 23	TRP 249

There are 60 helices in PDB entry 6GPK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	46	Right-handed alpha
Helix 2	AA2	A	65	69	Right-handed 310
Helix 3	AA3	A	89	101	Right-handed alpha
Helix 4	AA4	A	113	118	Right-handed alpha
Helix 5	AA5	A	120	129	Right-handed alpha
Helix 6	AA6	A	129	142	Right-handed alpha
Helix 7	AA7	A	157	160	Right-handed 310
Helix 8	AA8	A	177	198	Right-handed alpha
Helix 9	AA9	A	218	232	Right-handed alpha
Helix 10	AB1	A	252	265	Right-handed alpha
Helix 11	AB2	A	281	291	Right-handed alpha
Helix 12	AB3	A	301	305	Right-handed 310
Helix 13	AB4	A	321	324	Right-handed 310
Helix 14	AB5	A	336	344	Right-handed alpha
Helix 15	AB6	A	350	369	Right-handed alpha
Helix 16	AB7	B	33	46	Right-handed alpha
Helix 17	AB8	B	65	69	Right-handed 310
Helix 18	AB9	B	89	101	Right-handed alpha
Helix 19	AC1	B	113	120	Right-handed alpha
Helix 20	AC2	B	120	129	Right-handed alpha
Helix 21	AC3	B	129	142	Right-handed alpha
Helix 22	AC4	B	157	160	Right-handed 310
Helix 23	AC5	B	177	198	Right-handed alpha
Helix 24	AC6	B	218	232	Right-handed alpha
Helix 25	AC7	B	252	265	Right-handed alpha
Helix 26	AC8	B	281	291	Right-handed alpha
Helix 27	AC9	B	301	305	Right-handed 310
Helix 28	AD1	B	321	324	Right-handed 310
Helix 29	AD2	B	336	344	Right-handed alpha
Helix 30	AD3	B	350	369	Right-handed alpha
Helix 31	AD4	C	33	46	Right-handed alpha
Helix 32	AD5	C	65	69	Right-handed 310
Helix 33	AD6	C	89	101	Right-handed alpha
Helix 34	AD7	C	113	118	Right-handed alpha
Helix 35	AD8	C	120	129	Right-handed alpha
Helix 36	AD9	C	129	142	Right-handed alpha
Helix 37	AE1	C	157	160	Right-handed 310
Helix 38	AE2	C	177	198	Right-handed alpha
Helix 39	AE3	C	218	232	Right-handed alpha
Helix 40	AE4	C	252	265	Right-handed alpha
Helix 41	AE5	C	281	292	Right-handed alpha
Helix 42	AE6	C	301	305	Right-handed 310
Helix 43	AE7	C	321	324	Right-handed 310
Helix 44	AE8	C	336	344	Right-handed alpha
Helix 45	AE9	C	350	369	Right-handed alpha
Helix 46	AF1	D	33	46	Right-handed alpha
Helix 47	AF2	D	65	69	Right-handed 310
Helix 48	AF3	D	89	101	Right-handed alpha
Helix 49	AF4	D	113	120	Right-handed alpha
Helix 50	AF5	D	120	129	Right-handed alpha
Helix 51	AF6	D	129	142	Right-handed alpha
Helix 52	AF7	D	157	159	Right-handed 310
Helix 53	AF8	D	177	198	Right-handed alpha
Helix 54	AF9	D	218	232	Right-handed alpha
Helix 55	AG1	D	252	265	Right-handed alpha
Helix 56	AG2	D	281	291	Right-handed alpha
Helix 57	AG3	D	301	305	Right-handed 310
Helix 58	AG4	D	321	324	Right-handed 310
Helix 59	AG5	D	336	344	Right-handed alpha
Helix 60	AG6	D	350	369	Right-handed alpha

There are 16 sheets in PDB entry 6GPK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	84	first strand
Strand 2	A	49	54	parallel
Strand 3	A	25	29	parallel
Strand 4	A	104	107	parallel
Strand 5	A	149	155	parallel
Strand 6	A	200	206	parallel
Strand 7	A	271	273	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	210	first strand
Strand 2	A	250	251	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	315	319	parallel
Strand 3	A	306	309	anti-parallel
Strand 4	A	296	299	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	279	280	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	84	first strand
Strand 2	B	49	54	parallel
Strand 3	B	25	29	parallel
Strand 4	B	104	107	parallel
Strand 5	B	149	155	parallel
Strand 6	B	200	206	parallel
Strand 7	B	271	273	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	210	first strand
Strand 2	B	250	251	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	240	first strand
Strand 2	B	315	319	parallel
Strand 3	B	306	309	anti-parallel
Strand 4	B	296	299	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	247	first strand
Strand 2	B	279	280	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	84	first strand
Strand 2	C	49	54	parallel
Strand 3	C	25	29	parallel
Strand 4	C	104	107	parallel
Strand 5	C	149	155	parallel
Strand 6	C	200	206	parallel
Strand 7	C	271	273	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	210	first strand
Strand 2	C	250	251	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	240	first strand
Strand 2	C	315	319	parallel
Strand 3	C	306	309	anti-parallel
Strand 4	C	296	299	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	247	first strand
Strand 2	C	279	280	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	84	first strand
Strand 2	D	49	54	parallel
Strand 3	D	25	29	parallel
Strand 4	D	104	107	parallel
Strand 5	D	149	155	parallel
Strand 6	D	200	206	parallel
Strand 7	D	271	273	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	210	first strand
Strand 2	D	250	251	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	240	first strand
Strand 2	D	315	319	parallel
Strand 3	D	306	309	anti-parallel
Strand 4	D	296	299	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	247	first strand
Strand 2	D	279	280	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GPK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GPK