Analysis of interatomic Contacts of Structural Units in PDB entry:
6GPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GPM entry

There is 1 chain in PDB entry 6GPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 96SER 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 6GPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
112 116Right-handed 310
Helix 2
AA2
A
126 133Right-handed alpha
Helix 3
AA3
A
145 155Right-handed alpha
Helix 4
AA4
A
165 173Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6GPM.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
119 123parallel
Strand 3
A
160 164parallel
Strand 4
A
97 102anti-parallel
Strand 5
A
178 180anti-parallel
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