Analysis of interatomic Contacts of Structural Units in PDB entry:
6GPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GPS entry

There is 1 chain in PDB entry 6GPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 37GLY 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6GPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 70Right-handed alpha
Helix 2
AA2
A
75 93Right-handed alpha
Helix 3
AA3
A
94 102Right-handed alpha
Helix 4
AA4
A
109 143Right-handed alpha
Helix 5
AA5
A
152 178Right-handed alpha
Helix 6
AA6
A
195 211Right-handed alpha
Helix 7
AA7
A
211 1002Right-handed alpha
Helix 8
AA8
A
1019 1023Right-handed 310
Helix 9
AA9
A
1045 1047Right-handed 310
Helix 10
AB1
A
236 241Right-handed alpha
Helix 11
AB2
A
241 268Right-handed alpha
Helix 12
AB3
A
280 297Right-handed alpha
Helix 13
AB4
A
300 308Right-handed alpha
Helix 14
AB5
A
310 319Right-handed alpha
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There are 2 sheets in PDB entry 6GPS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 184first strand
Strand 2
A
187 192anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1012 1013first strand
Strand 2
A
1004 1006anti-parallel
Strand 3
A
1049 1051anti-parallel
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