Analysis of interatomic Contacts of Structural Units in PDB entry:
6GPX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GPX entry

There are 2 chains in PDB entry 6GPX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 36GLU 373
B
 PHE 35VAL 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6GPX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 70Right-handed alpha
Helix 2
AA2
A
75 93Right-handed alpha
Helix 3
AA3
A
94 104Right-handed alpha
Helix 4
AA4
A
108 144Right-handed alpha
Helix 5
AA5
A
154 178Right-handed alpha
Helix 6
AA6
A
195 211Right-handed alpha
Helix 7
AA7
A
211 229Right-handed alpha
Helix 8
AA8
A
250 254Right-handed 310
Helix 9
AA9
A
260 264Right-handed 310
Helix 10
AB1
A
276 278Right-handed 310
Helix 11
AB2
A
292 319Right-handed alpha
Helix 12
AB3
A
319 324Right-handed alpha
Helix 13
AB4
A
327 347Right-handed alpha
Helix 14
AB5
A
348 350Right-handed 310
Helix 15
AB6
A
351 360Right-handed alpha
Helix 16
AB7
A
360 373Right-handed alpha
Helix 17
AB8
B
36 70Right-handed alpha
Helix 18
AB9
B
75 93Right-handed alpha
Helix 19
AC1
B
94 104Right-handed alpha
Helix 20
AC2
B
108 143Right-handed alpha
Helix 21
AC3
B
152 178Right-handed alpha
Helix 22
AC4
B
195 211Right-handed alpha
Helix 23
AC5
B
211 229Right-handed alpha
Helix 24
AC6
B
242 268Right-handed alpha
Helix 25
AC7
B
268 273Right-handed alpha
Helix 26
AC8
B
276 296Right-handed alpha
Helix 27
AC9
B
297 299Right-handed 310
Helix 28
AD1
B
300 308Right-handed alpha
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There are 4 sheets in PDB entry 6GPX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 184first strand
Strand 2
A
187 192anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
B
146 148anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
235 237anti-parallel
Strand 3
A
280 282anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 184first strand
Strand 2
B
187 192anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il