Analysis of interatomic Contacts of Structural Units in PDB entry:
6GQ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GQ3 entry

There are 2 chains in PDB entry 6GQ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 1HIS 534
B
 CYS 1HIS 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 49 helices in PDB entry 6GQ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed alpha
Helix 2
AA2
A
19 27Right-handed 310
Helix 3
AA3
A
79 88Right-handed alpha
Helix 4
AA4
A
97 114Right-handed alpha
Helix 5
AA5
A
159 163Right-handed 310
Helix 6
AA6
A
226 245Right-handed alpha
Helix 7
AA7
A
259 276Right-handed alpha
Helix 8
AA8
A
292 306Right-handed alpha
Helix 9
AA9
A
315 331Right-handed alpha
Helix 10
AB1
A
334 355Right-handed alpha
Helix 11
AB2
A
365 371Right-handed alpha
Helix 12
AB3
A
373 379Right-handed 310
Helix 13
AB4
A
381 396Right-handed alpha
Helix 14
AB5
A
399 410Right-handed alpha
Helix 15
AB6
A
417 420Right-handed 310
Helix 16
AB7
A
421 430Right-handed alpha
Helix 17
AB8
A
432 437Right-handed alpha
Helix 18
AB9
A
444 451Right-handed alpha
Helix 19
AC1
A
458 463Right-handed alpha
Helix 20
AC2
A
480 492Right-handed alpha
Helix 21
AC3
A
493 499Right-handed alpha
Helix 22
AC4
A
499 504Right-handed alpha
Helix 23
AC5
A
511 525Right-handed alpha
Helix 24
AC6
A
528 532Right-handed 310
Helix 25
AC7
B
16 21Right-handed alpha
Helix 26
AC8
B
22 27Right-handed 310
Helix 27
AC9
B
79 88Right-handed alpha
Helix 28
AD1
B
97 108Right-handed alpha
Helix 29
AD2
B
108 114Right-handed alpha
Helix 30
AD3
B
159 163Right-handed 310
Helix 31
AD4
B
226 245Right-handed alpha
Helix 32
AD5
B
259 276Right-handed alpha
Helix 33
AD6
B
292 306Right-handed alpha
Helix 34
AD7
B
315 331Right-handed alpha
Helix 35
AD8
B
334 355Right-handed alpha
Helix 36
AD9
B
365 371Right-handed alpha
Helix 37
AE1
B
373 379Right-handed 310
Helix 38
AE2
B
381 396Right-handed alpha
Helix 39
AE3
B
399 410Right-handed alpha
Helix 40
AE4
B
417 420Right-handed 310
Helix 41
AE5
B
421 431Right-handed alpha
Helix 42
AE6
B
432 437Right-handed alpha
Helix 43
AE7
B
444 451Right-handed alpha
Helix 44
AE8
B
458 463Right-handed alpha
Helix 45
AE9
B
480 490Right-handed alpha
Helix 46
AF1
B
493 499Right-handed alpha
Helix 47
AF2
B
499 504Right-handed alpha
Helix 48
AF3
B
511 525Right-handed alpha
Helix 49
AF4
B
528 532Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 6GQ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
145 148anti-parallel
Strand 3
A
154 157anti-parallel
Strand 4
A
2 7anti-parallel
Strand 5
A
39 48anti-parallel
Strand 6
A
30 36anti-parallel
Strand 7
B
30 36anti-parallel
Strand 8
B
39 48anti-parallel
Strand 9
B
2 7anti-parallel
Strand 10
B
154 157anti-parallel
Strand 11
B
145 148anti-parallel
Strand 12
B
176 178anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 77first strand
Strand 2
A
118 126anti-parallel
Strand 3
A
131 136anti-parallel
Strand 4
A
183 189anti-parallel
Strand 5
A
195 202anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 313first strand
Strand 2
A
283 288parallel
Strand 3
A
251 255parallel
Strand 4
A
357 361parallel
Strand 5
A
414 416parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
66 77anti-parallel
Strand 3
B
118 126anti-parallel
Strand 4
B
131 136anti-parallel
Strand 5
B
183 189anti-parallel
Strand 6
B
195 202anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 313first strand
Strand 2
B
283 288parallel
Strand 3
B
251 255parallel
Strand 4
B
357 361parallel
Strand 5
B
414 416parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il