Analysis of interatomic Contacts of Structural Units in PDB entry:
6GQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GQD entry

There is 1 chain in PDB entry 6GQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 21LEU 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6GQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
138 142Right-handed 310
Helix 2
AA2
A
143 163Right-handed alpha
Helix 3
AA3
A
175 179Right-handed 310
Helix 4
AA4
A
196 214Right-handed alpha
Helix 5
AA5
A
216 229Right-handed alpha
Helix 6
AA6
A
263 267Right-handed 310
Helix 7
AA7
A
268 290Right-handed alpha
Helix 8
AA8
A
305 309Right-handed 310
Helix 9
AA9
A
338 343Right-handed alpha
Helix 10
AB1
A
350 361Right-handed alpha
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There are 3 sheets in PDB entry 6GQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
40 44anti-parallel
Strand 3
A
345 347parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
124 130anti-parallel
Strand 3
A
186 192anti-parallel
Strand 4
A
167 174anti-parallel
Strand 5
A
296 301anti-parallel
Strand 6
A
319 323anti-parallel
Strand 7
A
253 257anti-parallel
Strand 8
A
239 242anti-parallel
Strand 9
A
232 235anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
117 119anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il