Analysis of interatomic Contacts of Structural Units in PDB entry:
6GQF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GQF entry

There are 4 chains in PDB entry 6GQF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 364	GLU 536
B	LEU 365	ALA 533
C	LEU 365	GLU 541
D	LEU 365	LYS 537

There are 15 helices in PDB entry 6GQF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	381	390	Right-handed alpha
Helix 2	AA2	A	393	403	Right-handed alpha
Helix 3	AA3	A	506	534	Right-handed alpha
Helix 4	AA4	B	381	390	Right-handed alpha
Helix 5	AA5	B	393	403	Right-handed alpha
Helix 6	AA6	B	506	531	Right-handed alpha
Helix 7	AA7	C	381	390	Right-handed alpha
Helix 8	AA8	C	393	403	Right-handed alpha
Helix 9	AA9	C	471	473	Right-handed 310
Helix 10	AB1	C	506	533	Right-handed alpha
Helix 11	AB2	C	535	540	Right-handed alpha
Helix 12	AB3	D	381	390	Right-handed alpha
Helix 13	AB4	D	393	403	Right-handed alpha
Helix 14	AB5	D	452	455	Right-handed 310
Helix 15	AB6	D	506	535	Right-handed alpha

There are 5 sheets in PDB entry 6GQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	378	first strand
Strand 2	A	490	501	anti-parallel
Strand 3	A	475	487	anti-parallel
Strand 4	A	458	467	anti-parallel
Strand 5	A	439	449	anti-parallel
Strand 6	A	421	430	anti-parallel
Strand 7	A	406	410	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	378	first strand
Strand 2	B	490	501	anti-parallel
Strand 3	B	475	487	anti-parallel
Strand 4	B	459	467	anti-parallel
Strand 5	B	439	449	anti-parallel
Strand 6	B	420	430	anti-parallel
Strand 7	B	406	410	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	378	first strand
Strand 2	C	490	501	anti-parallel
Strand 3	C	475	487	anti-parallel
Strand 4	C	458	467	anti-parallel
Strand 5	C	440	449	anti-parallel
Strand 6	C	422	429	anti-parallel
Strand 7	C	406	410	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	378	first strand
Strand 2	D	490	501	anti-parallel
Strand 3	D	475	487	anti-parallel
Strand 4	D	457	467	anti-parallel
Strand 5	D	440	450	anti-parallel
Strand 6	D	421	429	anti-parallel
Strand 7	D	406	410	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	378	first strand
Strand 2	D	490	501	anti-parallel
Strand 3	D	475	487	anti-parallel
Strand 4	D	457	467	anti-parallel
Strand 5	D	440	450	anti-parallel
Strand 6	D	421	429	anti-parallel
Strand 7	D	414	415	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GQF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GQF