Analysis of interatomic Contacts of Structural Units in PDB entry:
6GQK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GQK entry

There are 2 chains in PDB entry 6GQK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 567SER 931
B
 ASP 572SER 931
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6GQK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
572 576Right-handed 310
Helix 2
AA2
A
579 583Right-handed 310
Helix 3
AA3
A
585 587Right-handed 310
Helix 4
AA4
A
630 648Right-handed alpha
Helix 5
AA5
A
677 686Right-handed alpha
Helix 6
AA6
A
757 762Right-handed 310
Helix 7
AA7
A
766 786Right-handed alpha
Helix 8
AA8
A
794 796Right-handed 310
Helix 9
AA9
A
802 804Right-handed 310
Helix 10
AB1
A
811 815Right-handed 310
Helix 11
AB2
A
832 836Right-handed 310
Helix 12
AB3
A
837 844Right-handed alpha
Helix 13
AB4
A
847 864Right-handed alpha
Helix 14
AB5
A
876 885Right-handed alpha
Helix 15
AB6
A
896 907Right-handed alpha
Helix 16
AB7
A
910 914Right-handed 310
Helix 17
AB8
A
916 931Right-handed alpha
Helix 18
AB9
B
572 576Right-handed 310
Helix 19
AC1
B
579 583Right-handed 310
Helix 20
AC2
B
585 587Right-handed 310
Helix 21
AC3
B
630 648Right-handed alpha
Helix 22
AC4
B
677 686Right-handed alpha
Helix 23
AC5
B
687 689Right-handed 310
Helix 24
AC6
B
765 786Right-handed alpha
Helix 25
AC7
B
794 796Right-handed 310
Helix 26
AC8
B
802 804Right-handed 310
Helix 27
AC9
B
811 815Right-handed 310
Helix 28
AD1
B
816 820Right-handed 310
Helix 29
AD2
B
832 836Right-handed 310
Helix 30
AD3
B
837 844Right-handed alpha
Helix 31
AD4
B
847 864Right-handed alpha
Helix 32
AD5
B
876 885Right-handed alpha
Helix 33
AD6
B
896 907Right-handed alpha
Helix 34
AD7
B
910 914Right-handed 310
Helix 35
AD8
B
916 931Right-handed alpha
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There are 7 sheets in PDB entry 6GQK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 597first strand
Strand 2
A
601 608anti-parallel
Strand 3
A
618 625anti-parallel
Strand 4
A
667 671anti-parallel
Strand 5
A
656 660anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
689 690first strand
Strand 2
A
764 765parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 800first strand
Strand 2
A
806 808anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
824 826first strand
Strand 2
A
829 831anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
589 597first strand
Strand 2
B
601 608anti-parallel
Strand 3
B
618 625anti-parallel
Strand 4
B
667 671anti-parallel
Strand 5
B
656 660anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
798 800first strand
Strand 2
B
806 808anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
824 826first strand
Strand 2
B
829 831anti-parallel
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