Analysis of interatomic Contacts of Structural Units in PDB entry:
6GQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GQQ entry

There is 1 chain in PDB entry 6GQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 813ASN 1167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6GQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
816 820Right-handed 310
Helix 2
AA2
A
823 828Right-handed alpha
Helix 3
AA3
A
830 832Right-handed 310
Helix 4
AA4
A
875 893Right-handed alpha
Helix 5
AA5
A
924 931Right-handed alpha
Helix 6
AA6
A
932 935Right-handed 310
Helix 7
AA7
A
1001 1022Right-handed alpha
Helix 8
AA8
A
1030 1032Right-handed 310
Helix 9
AA9
A
1038 1040Right-handed 310
Helix 10
AB1
A
1047 1051Right-handed 310
Helix 11
AB2
A
1068 1072Right-handed 310
Helix 12
AB3
A
1073 1080Right-handed alpha
Helix 13
AB4
A
1083 1100Right-handed alpha
Helix 14
AB5
A
1112 1122Right-handed alpha
Helix 15
AB6
A
1132 1143Right-handed alpha
Helix 16
AB7
A
1146 1150Right-handed 310
Helix 17
AB8
A
1152 1167Right-handed alpha
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There are 3 sheets in PDB entry 6GQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
834 842first strand
Strand 2
A
846 854anti-parallel
Strand 3
A
862 870anti-parallel
Strand 4
A
913 917anti-parallel
Strand 5
A
901 905anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
922 923first strand
Strand 2
A
1034 1036anti-parallel
Strand 3
A
1042 1044anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1060 1062first strand
Strand 2
A
1065 1067anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il