Analysis of interatomic Contacts of Structural Units in PDB entry:
6GRE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GRE entry

There are 2 chains in PDB entry 6GRE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 30GLY 236
B
 ASP 29GLY 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6GRE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 62Right-handed alpha
Helix 2
AA2
A
94 114Right-handed alpha
Helix 3
AA3
A
156 173Right-handed alpha
Helix 4
AA4
A
196 216Right-handed alpha
Helix 5
AA5
B
45 62Right-handed alpha
Helix 6
AA6
B
94 114Right-handed alpha
Helix 7
AA7
B
156 170Right-handed alpha
Helix 8
AA8
B
196 216Right-handed alpha
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There are 3 sheets in PDB entry 6GRE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
119 122anti-parallel
Strand 3
A
126 131anti-parallel
Strand 4
A
83 89anti-parallel
Strand 5
A
67 72anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 182first strand
Strand 2
A
185 191anti-parallel
Strand 3
A
228 234anti-parallel
Strand 4
A
221 225anti-parallel
Strand 5
A
143 148anti-parallel
Strand 6
B
143 148anti-parallel
Strand 7
B
221 225anti-parallel
Strand 8
B
228 234anti-parallel
Strand 9
B
185 191anti-parallel
Strand 10
B
177 182anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
119 122anti-parallel
Strand 3
B
126 131anti-parallel
Strand 4
B
83 89anti-parallel
Strand 5
B
67 72anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il