Analysis of interatomic Contacts of Structural Units in PDB entry:
6GRK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GRK entry

There are 3 chains in PDB entry 6GRK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 7LEU 360
I
 ILE 7LEU 360
B
 ILE 7ALA 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6GRK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 33Right-handed alpha
Helix 2
AA2
A
41 43Right-handed 310
Helix 3
AA3
A
44 68Right-handed alpha
Helix 4
AA4
A
69 94Right-handed alpha
Helix 5
AA5
A
99 153Right-handed alpha
Helix 6
AA6
A
156 186Right-handed alpha
Helix 7
AA7
A
225 247Right-handed alpha
Helix 8
AA8
A
252 302Right-handed alpha
Helix 9
AA9
A
306 320Right-handed alpha
Helix 10
AB1
A
320 339Right-handed alpha
Helix 11
AB2
A
349 359Right-handed alpha
Helix 12
AB3
I
8 33Right-handed alpha
Helix 13
AB4
I
44 69Right-handed alpha
Helix 14
AB5
I
69 94Right-handed alpha
Helix 15
AB6
I
99 152Right-handed alpha
Helix 16
AB7
I
156 186Right-handed alpha
Helix 17
AB8
I
225 247Right-handed alpha
Helix 18
AB9
I
252 302Right-handed alpha
Helix 19
AC1
I
306 318Right-handed alpha
Helix 20
AC2
I
320 339Right-handed alpha
Helix 21
AC3
I
349 359Right-handed alpha
Helix 22
AC4
B
8 33Right-handed alpha
Helix 23
AC5
B
41 43Right-handed 310
Helix 24
AC6
B
44 94Right-handed alpha
Helix 25
AC7
B
99 153Right-handed alpha
Helix 26
AC8
B
156 186Right-handed alpha
Helix 27
AC9
B
223 247Right-handed alpha
Helix 28
AD1
B
252 302Right-handed alpha
Helix 29
AD2
B
306 320Right-handed alpha
Helix 30
AD3
B
320 339Right-handed alpha
Helix 31
AD4
B
349 358Right-handed alpha
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There are 3 sheets in PDB entry 6GRK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 221first strand
Strand 2
A
193 197anti-parallel
Strand 3
A
340 341parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
217 221first strand
Strand 2
I
193 197anti-parallel
Strand 3
I
340 341parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 221first strand
Strand 2
B
193 197anti-parallel
Strand 3
B
340 341parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il