Analysis of interatomic Contacts of Structural Units in PDB entry:
6GRR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GRR entry

There are 2 chains in PDB entry 6GRR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 7	LYS 724
B	HIS 6	LYS 725

There are 30 helices in PDB entry 6GRR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	18	Right-handed alpha
Helix 2	AA2	A	73	80	Right-handed alpha
Helix 3	AA3	A	100	113	Right-handed alpha
Helix 4	AA4	A	132	143	Right-handed alpha
Helix 5	AA5	A	188	201	Right-handed alpha
Helix 6	AA6	A	202	212	Right-handed alpha
Helix 7	AA7	A	216	218	Right-handed 310
Helix 8	AA8	A	255	258	Right-handed 310
Helix 9	AA9	A	382	388	Right-handed alpha
Helix 10	AB1	A	504	509	Right-handed alpha
Helix 11	AB2	A	572	577	Right-handed alpha
Helix 12	AB3	A	625	631	Right-handed alpha
Helix 13	AB4	A	632	636	Right-handed 310
Helix 14	AB5	A	663	668	Right-handed alpha
Helix 15	AB6	A	692	696	Right-handed 310
Helix 16	AB7	B	10	18	Right-handed alpha
Helix 17	AB8	B	73	80	Right-handed alpha
Helix 18	AB9	B	100	113	Right-handed alpha
Helix 19	AC1	B	132	143	Right-handed alpha
Helix 20	AC2	B	188	201	Right-handed alpha
Helix 21	AC3	B	202	212	Right-handed alpha
Helix 22	AC4	B	216	218	Right-handed 310
Helix 23	AC5	B	255	258	Right-handed 310
Helix 24	AC6	B	382	388	Right-handed alpha
Helix 25	AC7	B	504	509	Right-handed alpha
Helix 26	AC8	B	572	577	Right-handed alpha
Helix 27	AC9	B	625	631	Right-handed alpha
Helix 28	AD1	B	632	636	Right-handed 310
Helix 29	AD2	B	663	668	Right-handed alpha
Helix 30	AD3	B	692	696	Right-handed 310

There are 23 sheets in PDB entry 6GRR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	29	34	anti-parallel
Strand 3	A	37	41	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	53	56	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	67	69	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	129	first strand
Strand 2	A	151	158	anti-parallel
Strand 3	A	161	168	anti-parallel
Strand 4	A	173	179	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	225	first strand
Strand 2	A	242	249	anti-parallel
Strand 3	A	264	269	anti-parallel
Strand 4	A	274	280	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	319	first strand
Strand 2	A	322	325	anti-parallel
Strand 3	A	328	335	anti-parallel
Strand 4	A	339	343	anti-parallel
Strand 5	A	357	362	anti-parallel
Strand 6	A	524	534	anti-parallel
Strand 7	A	679	689	anti-parallel
Strand 8	A	638	642	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	527	529	anti-parallel

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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	409	first strand
Strand 2	A	427	433	anti-parallel
Strand 3	A	453	463	anti-parallel
Strand 4	A	466	475	anti-parallel
Strand 5	A	480	488	anti-parallel
Strand 6	A	702	711	anti-parallel
Strand 7	A	600	606	anti-parallel
Strand 8	A	584	594	anti-parallel
Strand 9	A	542	552	anti-parallel
Strand 10	A	561	570	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	414	first strand
Strand 2	A	420	423	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	494	first strand
Strand 2	A	519	522	anti-parallel
Strand 3	A	512	516	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	349	first strand
Strand 2	A	352	357	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	440	first strand
Strand 2	A	448	451	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	9	first strand
Strand 2	B	69	71	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	29	34	anti-parallel
Strand 3	B	37	41	anti-parallel
Strand 4	B	47	50	anti-parallel
Strand 5	B	53	56	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	128	first strand
Strand 2	B	151	158	anti-parallel
Strand 3	B	161	168	anti-parallel
Strand 4	B	173	180	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	225	first strand
Strand 2	B	242	249	anti-parallel
Strand 3	B	264	269	anti-parallel
Strand 4	B	274	280	anti-parallel

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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	319	first strand
Strand 2	B	322	325	anti-parallel
Strand 3	B	328	335	anti-parallel
Strand 4	B	339	343	anti-parallel
Strand 5	B	357	362	anti-parallel
Strand 6	B	524	534	anti-parallel
Strand 7	B	679	689	anti-parallel
Strand 8	B	638	642	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	366	first strand
Strand 2	B	527	529	anti-parallel

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There are 10 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	409	first strand
Strand 2	B	427	433	anti-parallel
Strand 3	B	453	463	anti-parallel
Strand 4	B	466	475	anti-parallel
Strand 5	B	480	488	anti-parallel
Strand 6	B	702	711	anti-parallel
Strand 7	B	600	606	anti-parallel
Strand 8	B	584	594	anti-parallel
Strand 9	B	542	552	anti-parallel
Strand 10	B	561	570	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	414	first strand
Strand 2	B	420	423	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	494	first strand
Strand 2	B	519	522	anti-parallel
Strand 3	B	512	516	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	349	first strand
Strand 2	B	352	357	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	440	first strand
Strand 2	B	448	451	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GRR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GRR