Analysis of interatomic Contacts of Structural Units in PDB entry:
6GRU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GRU entry

There are 4 chains in PDB entry 6GRU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 14	ALA 207
B	LYS 14	ASN 208
C	GLN 15	ALA 207
D	LYS 14	ASN 208

There are 15 helices in PDB entry 6GRU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	118	Right-handed alpha
Helix 2	AA2	A	152	156	Right-handed 310
Helix 3	AA3	A	177	190	Right-handed alpha
Helix 4	AA4	A	195	207	Right-handed alpha
Helix 5	AA5	B	104	118	Right-handed alpha
Helix 6	AA6	B	152	156	Right-handed 310
Helix 7	AA7	B	177	190	Right-handed alpha
Helix 8	AA8	B	195	207	Right-handed alpha
Helix 9	AA9	C	104	118	Right-handed alpha
Helix 10	AB1	C	152	156	Right-handed 310
Helix 11	AB2	C	177	189	Right-handed alpha
Helix 12	AB3	C	195	207	Right-handed alpha
Helix 13	AB4	D	104	118	Right-handed alpha
Helix 14	AB5	D	177	189	Right-handed alpha
Helix 15	AB6	D	194	207	Right-handed alpha

There are 19 sheets in PDB entry 6GRU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	51	first strand
Strand 2	A	29	37	anti-parallel
Strand 3	A	16	22	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	61	69	anti-parallel
Strand 3	A	140	149	parallel
Strand 4	A	129	131	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	76	81	anti-parallel
Strand 3	A	169	174	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	84	first strand
Strand 2	A	89	94	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	126	first strand
Strand 2	A	144	147	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	51	first strand
Strand 2	B	29	37	anti-parallel
Strand 3	B	16	22	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	61	69	anti-parallel
Strand 3	B	140	149	parallel
Strand 4	B	129	131	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	76	81	anti-parallel
Strand 3	B	169	174	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	89	94	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	126	first strand
Strand 2	B	144	147	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	51	first strand
Strand 2	C	29	37	anti-parallel
Strand 3	C	16	22	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	61	69	anti-parallel
Strand 3	C	140	149	parallel
Strand 4	C	129	131	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	68	first strand
Strand 2	C	76	81	anti-parallel
Strand 3	C	169	174	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	84	first strand
Strand 2	C	89	94	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	144	147	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	51	first strand
Strand 2	D	29	37	anti-parallel
Strand 3	D	16	22	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	61	69	anti-parallel
Strand 3	D	141	149	parallel
Strand 4	D	122	126	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	68	first strand
Strand 2	D	76	81	anti-parallel
Strand 3	D	169	174	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	84	first strand
Strand 2	D	89	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GRU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GRU