Analysis of interatomic Contacts of Structural Units in PDB entry:
6GRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GRY entry

There is 1 chain in PDB entry 6GRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 25GLY 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6GRY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
48 55Right-handed alpha
Helix 3
AA3
A
55 68Right-handed alpha
Helix 4
AA4
A
163 167Right-handed 310
Helix 5
AA5
A
170 175Right-handed alpha
Helix 6
AA6
A
175 182Right-handed alpha
Helix 7
AA7
A
192 194Right-handed 310
Helix 8
AA8
A
200 205Right-handed 310
Helix 9
AA9
A
206 211Right-handed 310
Helix 10
AB1
A
224 241Right-handed alpha
Helix 11
AB2
A
257 270Right-handed alpha
Helix 12
AB3
A
288 292Right-handed 310
Helix 13
AB4
A
294 304Right-handed alpha
Helix 14
AB5
A
310 319Right-handed 310
Helix 15
AB6
A
325 332Right-handed alpha
Helix 16
AB7
A
350 362Right-handed alpha
Helix 17
AB8
A
362 367Right-handed alpha
Helix 18
AB9
A
401 417Right-handed alpha
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There are 2 sheets in PDB entry 6GRY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 90first strand
Strand 2
A
95 103anti-parallel
Strand 3
A
112 120anti-parallel
Strand 4
A
185 190anti-parallel
Strand 5
A
127 134parallel
Strand 6
A
246 256parallel
Strand 7
A
275 279parallel
Strand 8
A
337 343parallel
Strand 9
A
389 394parallel
Strand 10
A
385 386anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
159 161anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il