Analysis of interatomic Contacts of Structural Units in PDB entry:
6GS8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GS8 entry

There are 5 chains in PDB entry 6GS8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	HIS 307
B	MSE 1	HIS 307
C	MSE 1	GLU 290
D	MSE 1	GLU 290
E	MSE 1	GLN 114

There are 79 helices in PDB entry 6GS8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	41	Right-handed alpha
Helix 2	AA2	A	52	65	Right-handed alpha
Helix 3	AA3	A	66	71	Right-handed 310
Helix 4	AA4	A	80	84	Right-handed 310
Helix 5	AA5	A	85	96	Right-handed alpha
Helix 6	AA6	A	119	132	Right-handed alpha
Helix 7	AA7	A	147	152	Right-handed alpha
Helix 8	AA8	A	168	181	Right-handed alpha
Helix 9	AA9	A	192	196	Right-handed 310
Helix 10	AB1	A	221	226	Right-handed 310
Helix 11	AB2	A	232	242	Right-handed alpha
Helix 12	AB3	A	256	269	Right-handed alpha
Helix 13	AB4	A	274	293	Right-handed alpha
Helix 14	AB5	A	296	305	Right-handed alpha
Helix 15	AB6	B	27	41	Right-handed alpha
Helix 16	AB7	B	52	65	Right-handed alpha
Helix 17	AB8	B	66	71	Right-handed 310
Helix 18	AB9	B	80	84	Right-handed 310
Helix 19	AC1	B	85	96	Right-handed alpha
Helix 20	AC2	B	119	132	Right-handed alpha
Helix 21	AC3	B	147	152	Right-handed alpha
Helix 22	AC4	B	168	181	Right-handed alpha
Helix 23	AC5	B	221	226	Right-handed 310
Helix 24	AC6	B	232	242	Right-handed alpha
Helix 25	AC7	B	256	269	Right-handed alpha
Helix 26	AC8	B	274	286	Right-handed alpha
Helix 27	AC9	B	287	289	Right-handed 310
Helix 28	AD1	B	296	305	Right-handed alpha
Helix 29	AD2	C	27	41	Right-handed alpha
Helix 30	AD3	C	52	65	Right-handed alpha
Helix 31	AD4	C	66	71	Right-handed 310
Helix 32	AD5	C	80	84	Right-handed 310
Helix 33	AD6	C	85	96	Right-handed alpha
Helix 34	AD7	C	119	132	Right-handed alpha
Helix 35	AD8	C	147	153	Right-handed alpha
Helix 36	AD9	C	168	181	Right-handed alpha
Helix 37	AE1	C	222	226	Right-handed 310
Helix 38	AE2	C	232	242	Right-handed alpha
Helix 39	AE3	C	256	267	Right-handed alpha
Helix 40	AE4	C	274	287	Right-handed alpha
Helix 41	AE5	D	7	10	Right-handed 310
Helix 42	AE6	D	27	41	Right-handed alpha
Helix 43	AE7	D	52	65	Right-handed alpha
Helix 44	AE8	D	66	71	Right-handed 310
Helix 45	AE9	D	80	84	Right-handed 310
Helix 46	AF1	D	85	96	Right-handed alpha
Helix 47	AF2	D	119	132	Right-handed alpha
Helix 48	AF3	D	147	153	Right-handed alpha
Helix 49	AF4	D	168	181	Right-handed alpha
Helix 50	AF5	D	221	226	Right-handed 310
Helix 51	AF6	D	232	242	Right-handed alpha
Helix 52	AF7	D	256	269	Right-handed alpha
Helix 53	AF8	D	274	287	Right-handed alpha
Helix 54	AF9	E	27	41	Right-handed alpha
Helix 55	AG1	E	52	65	Right-handed alpha
Helix 56	AG2	E	66	71	Right-handed 310
Helix 57	AG3	E	80	84	Right-handed 310
Helix 58	AG4	E	85	96	Right-handed alpha
Helix 59	AG5	E	119	132	Right-handed alpha
Helix 60	AG6	E	147	152	Right-handed alpha
Helix 61	AG7	E	168	181	Right-handed alpha
Helix 62	AG8	E	192	196	Right-handed 310
Helix 63	AG9	E	221	226	Right-handed 310
Helix 64	AH1	E	232	242	Right-handed alpha
Helix 65	AH2	E	256	269	Right-handed alpha
Helix 66	AH3	E	274	288	Right-handed alpha
Helix 67	AH4	F	27	41	Right-handed alpha
Helix 68	AH5	F	52	65	Right-handed alpha
Helix 69	AH6	F	66	71	Right-handed 310
Helix 70	AH7	F	80	84	Right-handed 310
Helix 71	AH8	F	85	96	Right-handed alpha
Helix 72	AH9	F	119	132	Right-handed alpha
Helix 73	AI1	F	147	153	Right-handed alpha
Helix 74	AI2	F	168	181	Right-handed alpha
Helix 75	AI3	F	192	196	Right-handed 310
Helix 76	AI4	F	221	226	Right-handed 310
Helix 77	AI5	F	232	242	Right-handed alpha
Helix 78	AI6	F	256	268	Right-handed alpha
Helix 79	AI7	F	274	287	Right-handed alpha

There are 12 sheets in PDB entry 6GS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	12	14	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	21	first strand
Strand 2	A	45	49	parallel
Strand 3	A	72	77	parallel
Strand 4	A	107	111	parallel
Strand 5	A	138	141	parallel
Strand 6	A	156	162	parallel
Strand 7	A	184	188	parallel
Strand 8	A	249	253	parallel
Strand 9	A	16	21	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	12	14	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	21	first strand
Strand 2	B	45	49	parallel
Strand 3	B	72	77	parallel
Strand 4	B	107	111	parallel
Strand 5	B	138	141	parallel
Strand 6	B	156	162	parallel
Strand 7	B	184	188	parallel
Strand 8	B	249	253	parallel
Strand 9	B	16	21	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	12	14	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	21	first strand
Strand 2	C	45	49	parallel
Strand 3	C	72	77	parallel
Strand 4	C	107	111	parallel
Strand 5	C	138	141	parallel
Strand 6	C	156	162	parallel
Strand 7	C	184	188	parallel
Strand 8	C	249	253	parallel
Strand 9	C	16	21	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	12	14	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	21	first strand
Strand 2	D	45	49	parallel
Strand 3	D	72	77	parallel
Strand 4	D	107	111	parallel
Strand 5	D	138	141	parallel
Strand 6	D	156	162	parallel
Strand 7	D	184	188	parallel
Strand 8	D	249	253	parallel
Strand 9	D	16	21	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	12	14	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	21	first strand
Strand 2	E	45	49	parallel
Strand 3	E	72	77	parallel
Strand 4	E	107	111	parallel
Strand 5	E	138	141	parallel
Strand 6	E	156	162	parallel
Strand 7	E	184	188	parallel
Strand 8	E	249	253	parallel
Strand 9	E	16	21	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	5	first strand
Strand 2	F	12	14	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	21	first strand
Strand 2	F	45	49	parallel
Strand 3	F	72	77	parallel
Strand 4	F	107	111	parallel
Strand 5	F	138	141	parallel
Strand 6	F	156	162	parallel
Strand 7	F	184	188	parallel
Strand 8	F	249	253	parallel
Strand 9	F	16	21	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GS8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GS8