Analysis of interatomic Contacts of Structural Units in PDB entry:
6GSA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GSA entry

There are 5 chains in PDB entry 6GSA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 54SER 608
B
 SER 54SER 608
C
 SER 4GLU 189
D
 PHE 4SER 482
E
 GLN 44ARG 537
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are105 helices in PDB entry 6GSA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 72Right-handed alpha
Helix 2
AA2
A
74 79Right-handed alpha
Helix 3
AA3
A
95 105Right-handed alpha
Helix 4
AA4
A
107 121Right-handed alpha
Helix 5
AA5
A
122 127Right-handed alpha
Helix 6
AA6
A
132 134Right-handed 310
Helix 7
AA7
A
135 147Right-handed alpha
Helix 8
AA8
A
153 173Right-handed alpha
Helix 9
AA9
A
175 183Right-handed alpha
Helix 10
AB1
A
185 193Right-handed alpha
Helix 11
AB2
A
199 203Right-handed 310
Helix 12
AB3
A
204 222Right-handed alpha
Helix 13
AB4
A
230 241Right-handed alpha
Helix 14
AB5
A
244 249Right-handed alpha
Helix 15
AB6
A
249 266Right-handed alpha
Helix 16
AB7
A
279 302Right-handed alpha
Helix 17
AB8
A
340 356Right-handed alpha
Helix 18
AB9
A
366 386Right-handed alpha
Helix 19
AC1
A
394 421Right-handed alpha
Helix 20
AC2
A
426 444Right-handed alpha
Helix 21
AC3
A
445 447Right-handed 310
Helix 22
AC4
A
450 456Right-handed 310
Helix 23
AC5
A
457 477Right-handed alpha
Helix 24
AC6
A
479 495Right-handed alpha
Helix 25
AC7
A
497 499Right-handed 310
Helix 26
AC8
A
500 524Right-handed alpha
Helix 27
AC9
A
535 551Right-handed alpha
Helix 28
AD1
A
554 563Right-handed alpha
Helix 29
AD2
A
589 601Right-handed alpha
Helix 30
AD3
A
602 607Right-handed 310
Helix 31
AD4
B
56 72Right-handed alpha
Helix 32
AD5
B
74 79Right-handed alpha
Helix 33
AD6
B
95 105Right-handed alpha
Helix 34
AD7
B
107 122Right-handed alpha
Helix 35
AD8
B
122 127Right-handed alpha
Helix 36
AD9
B
136 147Right-handed alpha
Helix 37
AE1
B
153 173Right-handed alpha
Helix 38
AE2
B
175 183Right-handed alpha
Helix 39
AE3
B
185 193Right-handed alpha
Helix 40
AE4
B
203 223Right-handed alpha
Helix 41
AE5
B
231 241Right-handed alpha
Helix 42
AE6
B
244 249Right-handed alpha
Helix 43
AE7
B
249 266Right-handed alpha
Helix 44
AE8
B
279 302Right-handed alpha
Helix 45
AE9
B
340 357Right-handed alpha
Helix 46
AF1
B
366 387Right-handed alpha
Helix 47
AF2
B
393 421Right-handed alpha
Helix 48
AF3
B
427 444Right-handed alpha
Helix 49
AF4
B
450 455Right-handed 310
Helix 50
AF5
B
456 477Right-handed alpha
Helix 51
AF6
B
479 495Right-handed alpha
Helix 52
AF7
B
501 524Right-handed alpha
Helix 53
AF8
B
535 552Right-handed alpha
Helix 54
AF9
B
554 563Right-handed alpha
Helix 55
AG1
B
589 601Right-handed alpha
Helix 56
AG2
B
603 607Right-handed 310
Helix 57
AG3
C
20 24Right-handed alpha
Helix 58
AG4
C
28 33Right-handed alpha
Helix 59
AG5
C
83 97Right-handed alpha
Helix 60
AG6
C
107 113Right-handed alpha
Helix 61
AG7
C
117 124Right-handed alpha
Helix 62
AG8
C
127 141Right-handed alpha
Helix 63
AG9
C
143 160Right-handed alpha
Helix 64
AH1
C
177 188Right-handed alpha
Helix 65
AH2
D
7 12Right-handed alpha
Helix 66
AH3
D
13 23Right-handed alpha
Helix 67
AH4
D
97 111Right-handed alpha
Helix 68
AH5
D
143 156Right-handed alpha
Helix 69
AH6
D
176 190Right-handed alpha
Helix 70
AH7
D
258 267Right-handed alpha
Helix 71
AH8
D
280 288Right-handed alpha
Helix 72
AH9
D
371 381Right-handed alpha
Helix 73
AI1
D
383 389Right-handed alpha
Helix 74
AI2
D
419 432Right-handed alpha
Helix 75
AI3
D
457 459Right-handed 310
Helix 76
AI4
E
45 59Right-handed alpha
Helix 77
AI5
E
81 92Right-handed alpha
Helix 78
AI6
E
108 139Right-handed alpha
Helix 79
AI7
E
147 168Right-handed alpha
Helix 80
AI8
E
183 194Right-handed alpha
Helix 81
AI9
E
207 225Right-handed alpha
Helix 82
AJ1
E
227 232Right-handed alpha
Helix 83
AJ2
E
233 234Right-handed 310
Helix 84
AJ3
E
235 237Right-handed 310
Helix 85
AJ4
E
277 280Right-handed 310
Helix 86
AJ5
E
281 296Right-handed alpha
Helix 87
AJ6
E
308 312Right-handed 310
Helix 88
AJ7
E
317 321Right-handed 310
Helix 89
AJ8
E
334 349Right-handed alpha
Helix 90
AJ9
E
355 360Right-handed alpha
Helix 91
AK1
E
371 378Right-handed alpha
Helix 92
AK2
E
379 384Right-handed 310
Helix 93
AK3
E
389 393Right-handed 310
Helix 94
AK4
E
395 399Right-handed 310
Helix 95
AK5
E
400 408Right-handed alpha
Helix 96
AK6
E
428 433Right-handed alpha
Helix 97
AK7
E
434 436Right-handed 310
Helix 98
AK8
E
437 445Right-handed alpha
Helix 99
AK9
E
446 450Right-handed 310
Helix 100
AL1
E
451 479Right-handed alpha
Helix 101
AL2
E
482 491Right-handed 310
Helix 102
AL3
E
492 504Right-handed alpha
Helix 103
AL4
E
505 507Right-handed 310
Helix 104
AL5
E
520 525Right-handed alpha
Helix 105
AL6
E
526 532Right-handed alpha
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There are 8 sheets in PDB entry 6GSA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
332 333parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 528first strand
Strand 2
A
533 534anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
527 528first strand
Strand 2
B
533 534anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 19first strand
Strand 2
C
5 9anti-parallel
Strand 3
C
76 78parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 123first strand
Strand 2
D
126 132anti-parallel
Strand 3
D
138 142anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
198 200first strand
Strand 2
D
275 278parallel
Strand 3
D
311 314parallel
Strand 4
D
336 339parallel
Strand 5
D
358 361parallel
Strand 6
D
439 442parallel
Strand 7
D
465 466parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
391 392first strand
Strand 2
D
409 413anti-parallel
Strand 3
D
474 478parallel
Strand 4
D
452 455parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
239 241first strand
Strand 2
E
249 255anti-parallel
Strand 3
E
266 272anti-parallel
Strand 4
E
368 370anti-parallel
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