Analysis of interatomic Contacts of Structural Units in PDB entry:
6GSB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GSB entry

There are 2 chains in PDB entry 6GSB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -3LYS 202
B
 ASP -3LYS 202
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6GSB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 29Right-handed alpha
Helix 2
AA2
A
29 43Right-handed alpha
Helix 3
AA3
A
51 58Right-handed alpha
Helix 4
AA4
A
59 62Right-handed 310
Helix 5
AA5
A
63 82Right-handed alpha
Helix 6
AA6
A
92 104Right-handed alpha
Helix 7
AA7
A
105 120Right-handed alpha
Helix 8
AA8
A
165 168Right-handed 310
Helix 9
AA9
A
169 174Right-handed alpha
Helix 10
AB1
A
176 185Right-handed alpha
Helix 11
AB2
A
186 188Right-handed 310
Helix 12
AB3
A
189 202Right-handed alpha
Helix 13
AB4
B
19 29Right-handed alpha
Helix 14
AB5
B
29 43Right-handed alpha
Helix 15
AB6
B
45 50Right-handed 310
Helix 16
AB7
B
51 58Right-handed alpha
Helix 17
AB8
B
59 62Right-handed 310
Helix 18
AB9
B
63 82Right-handed alpha
Helix 19
AC1
B
92 104Right-handed alpha
Helix 20
AC2
B
105 120Right-handed alpha
Helix 21
AC3
B
165 168Right-handed 310
Helix 22
AC4
B
169 174Right-handed alpha
Helix 23
AC5
B
176 185Right-handed alpha
Helix 24
AC6
B
186 188Right-handed 310
Helix 25
AC7
B
189 202Right-handed alpha
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There are 2 sheets in PDB entry 6GSB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 142first strand
Strand 2
A
124 130anti-parallel
Strand 3
A
157 163anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 142first strand
Strand 2
B
124 131anti-parallel
Strand 3
B
156 163anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il