Analysis of interatomic Contacts of Structural Units in PDB entry:
6GSG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GSG entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 6GSG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5SER 12
A
 THR 14LEU 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6GSG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 37Right-handed alpha
Helix 2
AA2
A
59 61Right-handed 310
Helix 3
AA3
A
62 77Right-handed alpha
Helix 4
AA4
A
93 110Right-handed alpha
Helix 5
AA5
A
114 135Right-handed alpha
Helix 6
AA6
A
144 149Right-handed alpha
Helix 7
AA7
A
151 155Right-handed 310
Helix 8
AA8
A
242 250Right-handed alpha
Helix 9
AA9
A
251 261Right-handed alpha
Helix 10
AB1
A
264 274Right-handed alpha
Helix 11
AB2
A
281 290Right-handed alpha
Helix 12
AB3
A
301 306Right-handed 310
Helix 13
AB4
A
307 325Right-handed alpha
Helix 14
AB5
A
326 331Right-handed alpha
Helix 15
AB6
A
339 343Right-handed 310
Helix 16
AB7
A
368 371Right-handed 310
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There are 6 sheets in PDB entry 6GSG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
53 57parallel
Strand 3
A
380 382parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
196 199anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
188 190anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
235 236anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
223 224anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
365 366anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il