Analysis of interatomic Contacts of Structural Units in PDB entry:
6GSH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GSH entry

There are 3 chains in PDB entry 6GSH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 130	ILE 662
B	PRO 134	ARG 663
C	SER 130	ARG 663

There are 22 helices in PDB entry 6GSH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	148	160	Right-handed alpha
Helix 2	AA2	A	165	170	Right-handed 310
Helix 3	AA3	A	195	198	Right-handed 310
Helix 4	AA4	A	199	206	Right-handed alpha
Helix 5	AA5	A	246	251	Right-handed 310
Helix 6	AA6	A	346	350	Right-handed 310
Helix 7	AA7	A	449	453	Right-handed 310
Helix 8	AA8	A	588	598	Right-handed alpha
Helix 9	AA9	B	149	159	Right-handed alpha
Helix 10	AB1	B	165	170	Right-handed 310
Helix 11	AB2	B	195	198	Right-handed 310
Helix 12	AB3	B	199	206	Right-handed alpha
Helix 13	AB4	B	246	251	Right-handed 310
Helix 14	AB5	B	346	350	Right-handed 310
Helix 15	AB6	B	588	598	Right-handed alpha
Helix 16	AB7	C	149	159	Right-handed alpha
Helix 17	AB8	C	165	170	Right-handed 310
Helix 18	AB9	C	199	206	Right-handed alpha
Helix 19	AC1	C	246	251	Right-handed 310
Helix 20	AC2	C	346	350	Right-handed 310
Helix 21	AC3	C	448	455	Right-handed alpha
Helix 22	AC4	C	588	598	Right-handed alpha

There are 23 sheets in PDB entry 6GSH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	213	first strand
Strand 2	A	322	324	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	269	first strand
Strand 2	A	216	222	anti-parallel
Strand 3	A	311	317	anti-parallel
Strand 4	A	172	177	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	258	first strand
Strand 2	A	231	237	anti-parallel
Strand 3	A	287	294	anti-parallel
Strand 4	A	188	193	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	364	first strand
Strand 2	A	566	573	anti-parallel
Strand 3	A	580	585	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	490	first strand
Strand 2	A	509	511	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	624	first strand
Strand 2	A	606	613	anti-parallel
Strand 3	A	645	653	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	471	first strand
Strand 2	A	529	533	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	213	first strand
Strand 2	B	322	324	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	269	first strand
Strand 2	B	216	221	anti-parallel
Strand 3	B	308	317	anti-parallel
Strand 4	B	172	180	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	258	first strand
Strand 2	B	231	237	anti-parallel
Strand 3	B	287	294	anti-parallel
Strand 4	B	188	193	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	364	first strand
Strand 2	B	566	573	anti-parallel
Strand 3	B	580	585	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	395	first strand
Strand 2	B	525	528	anti-parallel
Strand 3	B	473	475	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	406	first strand
Strand 2	B	510	512	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	488	first strand
Strand 2	B	468	470	anti-parallel
Strand 3	B	530	533	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	608	613	first strand
Strand 2	B	619	624	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	213	first strand
Strand 2	C	322	324	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	221	first strand
Strand 2	C	308	316	anti-parallel
Strand 3	C	172	180	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	258	first strand
Strand 2	C	231	237	anti-parallel
Strand 3	C	287	292	anti-parallel
Strand 4	C	188	193	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	364	first strand
Strand 2	C	566	573	anti-parallel
Strand 3	C	580	585	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	396	first strand
Strand 2	C	524	528	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	406	first strand
Strand 2	C	510	512	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	651	653	first strand
Strand 2	C	606	613	anti-parallel
Strand 3	C	619	624	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	610	613	first strand
Strand 2	C	645	648	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GSH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GSH