Analysis of interatomic Contacts of Structural Units in PDB entry:
6GSI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GSI entry

There are 12 chains in PDB entry 6GSI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 130	ARG 663
B	PRO 134	ARG 663
C	SER 130	ARG 663
D	SER 130	ARG 663
E	VAL 30	ALA 230
F	ALA 29	ALA 230
G	VAL 30	GLU 229
H	ALA 29	MET 228
I	GLN 19	TYR 100
J	ALA 18	ASN 106
K	GLN 19	TYR 100
L	ALA 18	ASN 106

There are 50 helices in PDB entry 6GSI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	151	160	Right-handed alpha
Helix 2	AA2	A	195	198	Right-handed 310
Helix 3	AA3	A	199	206	Right-handed alpha
Helix 4	AA4	A	247	252	Right-handed 310
Helix 5	AA5	A	346	350	Right-handed 310
Helix 6	AA6	A	544	548	Right-handed 310
Helix 7	AA7	A	588	598	Right-handed alpha
Helix 8	AA8	B	150	157	Right-handed alpha
Helix 9	AA9	B	195	199	Right-handed 310
Helix 10	AB1	B	201	207	Right-handed alpha
Helix 11	AB2	B	247	251	Right-handed 310
Helix 12	AB3	B	544	548	Right-handed 310
Helix 13	AB4	B	588	595	Right-handed alpha
Helix 14	AB5	C	148	159	Right-handed alpha
Helix 15	AB6	C	165	170	Right-handed 310
Helix 16	AB7	C	195	198	Right-handed 310
Helix 17	AB8	C	199	206	Right-handed alpha
Helix 18	AB9	C	246	251	Right-handed 310
Helix 19	AC1	C	448	455	Right-handed alpha
Helix 20	AC2	C	588	598	Right-handed alpha
Helix 21	AC3	D	148	159	Right-handed alpha
Helix 22	AC4	D	165	170	Right-handed 310
Helix 23	AC5	D	195	198	Right-handed 310
Helix 24	AC6	D	199	206	Right-handed alpha
Helix 25	AC7	D	246	251	Right-handed 310
Helix 26	AC8	D	448	454	Right-handed alpha
Helix 27	AC9	D	544	548	Right-handed 310
Helix 28	AD1	D	588	598	Right-handed alpha
Helix 29	AD2	E	99	103	Right-handed 310
Helix 30	AD3	E	202	206	Right-handed 310
Helix 31	AD4	F	99	103	Right-handed 310
Helix 32	AD5	G	82	84	Right-handed 310
Helix 33	AD6	G	99	103	Right-handed 310
Helix 34	AD7	H	99	103	Right-handed 310
Helix 35	AD8	H	202	206	Right-handed 310
Helix 36	AD9	I	20	27	Right-handed alpha
Helix 37	AE1	I	30	52	Right-handed alpha
Helix 38	AE2	I	53	75	Right-handed alpha
Helix 39	AE3	I	87	94	Right-handed 310
Helix 40	AE4	J	19	62	Right-handed alpha
Helix 41	AE5	J	64	72	Right-handed alpha
Helix 42	AE6	J	90	105	Right-handed alpha
Helix 43	AE7	K	21	27	Right-handed alpha
Helix 44	AE8	K	30	60	Right-handed alpha
Helix 45	AE9	K	63	75	Right-handed alpha
Helix 46	AF1	K	87	91	Right-handed 310
Helix 47	AF2	L	19	23	Right-handed alpha
Helix 48	AF3	L	25	62	Right-handed alpha
Helix 49	AF4	L	63	72	Right-handed alpha
Helix 50	AF5	L	89	105	Right-handed alpha

There are 50 sheets in PDB entry 6GSI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	269	first strand
Strand 2	A	216	222	anti-parallel
Strand 3	A	311	316	anti-parallel
Strand 4	A	172	177	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	237	first strand
Strand 2	A	287	291	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	364	first strand
Strand 2	A	566	569	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	490	first strand
Strand 2	A	509	511	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	573	first strand
Strand 2	A	580	583	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	610	613	first strand
Strand 2	A	619	622	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	219	first strand
Strand 2	B	312	317	anti-parallel
Strand 3	B	172	176	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	258	first strand
Strand 2	B	231	236	anti-parallel
Strand 3	B	288	292	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	365	first strand
Strand 2	B	565	568	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	395	first strand
Strand 2	B	525	528	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	488	first strand
Strand 2	B	468	470	anti-parallel
Strand 3	B	530	533	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	620	622	first strand
Strand 2	B	610	612	anti-parallel
Strand 3	B	646	648	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	193	first strand
Strand 2	C	287	289	anti-parallel
Strand 3	C	235	237	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	213	first strand
Strand 2	C	322	324	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	221	first strand
Strand 2	C	310	316	anti-parallel
Strand 3	C	172	178	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	234	first strand
Strand 2	C	255	258	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	396	first strand
Strand 2	C	524	526	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	490	first strand
Strand 2	C	509	511	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	494	first strand
Strand 2	C	497	500	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	568	572	first strand
Strand 2	C	581	585	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	630	632	first strand
Strand 2	C	619	624	anti-parallel
Strand 3	C	606	613	anti-parallel
Strand 4	C	645	653	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	213	first strand
Strand 2	D	322	324	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	222	first strand
Strand 2	D	310	316	anti-parallel
Strand 3	D	172	178	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	234	first strand
Strand 2	D	255	257	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	237	first strand
Strand 2	D	287	291	anti-parallel
Strand 3	D	188	193	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	362	364	first strand
Strand 2	D	566	568	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	396	first strand
Strand 2	D	524	528	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	570	572	first strand
Strand 2	D	581	583	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	620	622	first strand
Strand 2	D	610	613	anti-parallel
Strand 3	D	645	648	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	40	first strand
Strand 2	E	125	128	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	109	111	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	65	first strand
Strand 2	E	68	71	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	107	first strand
Strand 2	E	122	124	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	138	first strand
Strand 2	E	148	153	anti-parallel
Strand 3	E	196	198	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	167	first strand
Strand 2	E	209	214	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	48	first strand
Strand 2	F	92	95	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	65	first strand
Strand 2	F	68	71	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	105	107	first strand
Strand 2	F	122	124	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	137	first strand
Strand 2	F	151	153	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	150	first strand
Strand 2	F	196	198	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	211	214	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	207	209	first strand
Strand 2	F	226	228	anti-parallel

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There are 3 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	48	first strand
Strand 2	G	92	95	anti-parallel
Strand 3	G	86	88	anti-parallel

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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	125	first strand
Strand 2	G	104	112	anti-parallel
Strand 3	G	57	65	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 2 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	135	137	first strand
Strand 2	G	151	153	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	162	165	first strand
Strand 2	G	211	214	anti-parallel

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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	39	first strand
Strand 2	H	118	127	parallel
Strand 3	H	104	112	anti-parallel
Strand 4	H	57	64	anti-parallel

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There are 2 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	47	first strand
Strand 2	H	93	95	anti-parallel

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There are 2 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	137	first strand
Strand 2	H	151	153	anti-parallel

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There are 2 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	166	first strand
Strand 2	H	210	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GSI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GSI