Analysis of interatomic Contacts of Structural Units in PDB entry:
6GSZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GSZ entry

There is 1 chain in PDB entry 6GSZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 870
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6GSZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
108 113Right-handed 310
Helix 2
AA2
A
207 212Right-handed alpha
Helix 3
AA3
A
273 275Right-handed 310
Helix 4
AA4
A
298 300Right-handed 310
Helix 5
AA5
A
368 372Right-handed 310
Helix 6
AA6
A
437 455Right-handed alpha
Helix 7
AA7
A
471 486Right-handed alpha
Helix 8
AA8
A
488 505Right-handed alpha
Helix 9
AA9
A
530 544Right-handed alpha
Helix 10
AB1
A
545 563Right-handed alpha
Helix 11
AB2
A
598 621Right-handed alpha
Helix 12
AB3
A
623 646Right-handed alpha
Helix 13
AB4
A
656 666Right-handed alpha
Helix 14
AB5
A
671 689Right-handed alpha
Helix 15
AB6
A
699 710Right-handed alpha
Helix 16
AB7
A
712 721Right-handed alpha
Helix 17
AB8
A
727 734Right-handed alpha
Helix 18
AB9
A
763 767Right-handed 310
Helix 19
AC1
A
768 775Right-handed alpha
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There are 11 sheets in PDB entry 6GSZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
26 31anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
A
100 104parallel
Strand 3
A
79 87anti-parallel
Strand 4
A
39 47anti-parallel
Strand 5
A
54 59anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
292 295anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
157 162anti-parallel
Strand 3
A
197 206anti-parallel
Strand 4
A
133 141anti-parallel
Strand 5
A
253 255anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
145 155anti-parallel
Strand 3
A
229 238anti-parallel
Strand 4
A
243 247anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
302 303parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 263first strand
Strand 2
A
267 271anti-parallel
Strand 3
A
377 381parallel
Strand 4
A
352 358anti-parallel
Strand 5
A
397 405anti-parallel
Strand 6
A
329 345anti-parallel
Strand 7
A
320 323anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 316first strand
Strand 2
A
418 425anti-parallel
Strand 3
A
329 345anti-parallel
Strand 4
A
388 390anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
365 366anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 435first strand
Strand 2
A
801 808anti-parallel
Strand 3
A
811 820anti-parallel
Strand 4
A
829 837anti-parallel
Strand 5
A
860 869anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
779 781first strand
Strand 2
A
788 791anti-parallel
Strand 3
A
842 846parallel
Strand 4
A
854 857anti-parallel
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