Analysis of interatomic Contacts of Structural Units in PDB entry:
6GT8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GT8 entry

There are 4 chains in PDB entry 6GT8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2VAL 154
A
 ASP 156GLU 294
B
 PRO 2VAL 154
B
 ASP 156GLU 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6GT8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 33Right-handed alpha
Helix 2
AA2
A
46 50Right-handed 310
Helix 3
AA3
A
51 64Right-handed alpha
Helix 4
AA4
A
77 88Right-handed alpha
Helix 5
AA5
A
89 91Right-handed 310
Helix 6
AA6
A
108 123Right-handed alpha
Helix 7
AA7
A
132 137Right-handed alpha
Helix 8
AA8
A
141 149Right-handed alpha
Helix 9
AA9
A
160 171Right-handed alpha
Helix 10
AB1
A
180 182Right-handed 310
Helix 11
AB2
A
183 190Right-handed alpha
Helix 12
AB3
A
198 202Right-handed 310
Helix 13
AB4
A
203 216Right-handed alpha
Helix 14
AB5
A
218 238Right-handed alpha
Helix 15
AB6
A
240 254Right-handed alpha
Helix 16
AB7
A
268 289Right-handed alpha
Helix 17
AB8
B
19 33Right-handed alpha
Helix 18
AB9
B
42 50Right-handed 310
Helix 19
AC1
B
51 64Right-handed alpha
Helix 20
AC2
B
77 88Right-handed alpha
Helix 21
AC3
B
89 91Right-handed 310
Helix 22
AC4
B
108 122Right-handed alpha
Helix 23
AC5
B
132 137Right-handed alpha
Helix 24
AC6
B
141 149Right-handed alpha
Helix 25
AC7
B
160 171Right-handed alpha
Helix 26
AC8
B
180 182Right-handed 310
Helix 27
AC9
B
183 190Right-handed alpha
Helix 28
AD1
B
198 202Right-handed 310
Helix 29
AD2
B
203 216Right-handed alpha
Helix 30
AD3
B
218 238Right-handed alpha
Helix 31
AD4
B
240 254Right-handed alpha
Helix 32
AD5
B
268 289Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6GT8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
37 40parallel
Strand 3
A
69 72parallel
Strand 4
A
95 99parallel
Strand 5
A
127 131parallel
Strand 6
A
151 156parallel
Strand 7
A
175 178parallel
Strand 8
A
194 196parallel
Strand 9
A
3 7parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
37 40parallel
Strand 3
B
69 72parallel
Strand 4
B
95 99parallel
Strand 5
B
127 131parallel
Strand 6
B
151 156parallel
Strand 7
B
175 178parallel
Strand 8
B
194 196parallel
Strand 9
B
3 7parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il