Analysis of interatomic Contacts of Structural Units in PDB entry:
6GT9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GT9 entry

There are 4 chains in PDB entry 6GT9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 44	LEU 326
B	GLU 44	LEU 326
C	GLU 44	LEU 326
D	GLU 44	LEU 326

There are 40 helices in PDB entry 6GT9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	79	Right-handed alpha
Helix 2	AA2	A	91	105	Right-handed alpha
Helix 3	AA3	A	116	130	Right-handed alpha
Helix 4	AA4	A	153	169	Right-handed alpha
Helix 5	AA5	A	184	199	Right-handed alpha
Helix 6	AA6	A	215	230	Right-handed alpha
Helix 7	AA7	A	242	255	Right-handed alpha
Helix 8	AA8	A	268	277	Right-handed alpha
Helix 9	AA9	A	287	304	Right-handed alpha
Helix 10	AB1	A	322	324	Right-handed 310
Helix 11	AB2	B	61	79	Right-handed alpha
Helix 12	AB3	B	91	105	Right-handed alpha
Helix 13	AB4	B	116	130	Right-handed alpha
Helix 14	AB5	B	153	169	Right-handed alpha
Helix 15	AB6	B	184	199	Right-handed alpha
Helix 16	AB7	B	215	230	Right-handed alpha
Helix 17	AB8	B	242	255	Right-handed alpha
Helix 18	AB9	B	268	278	Right-handed alpha
Helix 19	AC1	B	287	304	Right-handed alpha
Helix 20	AC2	B	322	324	Right-handed 310
Helix 21	AC3	C	61	79	Right-handed alpha
Helix 22	AC4	C	91	105	Right-handed alpha
Helix 23	AC5	C	116	130	Right-handed alpha
Helix 24	AC6	C	153	169	Right-handed alpha
Helix 25	AC7	C	184	199	Right-handed alpha
Helix 26	AC8	C	215	230	Right-handed alpha
Helix 27	AC9	C	242	255	Right-handed alpha
Helix 28	AD1	C	268	278	Right-handed alpha
Helix 29	AD2	C	287	304	Right-handed alpha
Helix 30	AD3	C	320	324	Right-handed 310
Helix 31	AD4	D	61	79	Right-handed alpha
Helix 32	AD5	D	91	105	Right-handed alpha
Helix 33	AD6	D	116	130	Right-handed alpha
Helix 34	AD7	D	153	169	Right-handed alpha
Helix 35	AD8	D	184	199	Right-handed alpha
Helix 36	AD9	D	215	230	Right-handed alpha
Helix 37	AE1	D	242	255	Right-handed alpha
Helix 38	AE2	D	268	277	Right-handed alpha
Helix 39	AE3	D	287	304	Right-handed alpha
Helix 40	AE4	D	322	324	Right-handed 310

There are 8 sheets in PDB entry 6GT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	84	first strand
Strand 2	A	51	55	parallel
Strand 3	A	109	112	parallel
Strand 4	A	134	137	parallel
Strand 5	A	148	151	parallel
Strand 6	A	311	313	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	211	first strand
Strand 2	A	173	179	parallel
Strand 3	A	235	238	parallel
Strand 4	A	261	265	parallel
Strand 5	A	282	285	parallel
Strand 6	A	317	320	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	84	first strand
Strand 2	B	51	55	parallel
Strand 3	B	109	112	parallel
Strand 4	B	134	137	parallel
Strand 5	B	148	151	parallel
Strand 6	B	311	313	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	211	first strand
Strand 2	B	173	179	parallel
Strand 3	B	235	238	parallel
Strand 4	B	261	265	parallel
Strand 5	B	282	284	parallel
Strand 6	B	318	320	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	84	first strand
Strand 2	C	51	55	parallel
Strand 3	C	109	112	parallel
Strand 4	C	134	137	parallel
Strand 5	C	148	151	parallel
Strand 6	C	311	313	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	211	first strand
Strand 2	C	172	179	parallel
Strand 3	C	235	238	parallel
Strand 4	C	261	265	parallel
Strand 5	C	282	284	parallel
Strand 6	C	318	319	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	51	55	parallel
Strand 3	D	109	113	parallel
Strand 4	D	134	137	parallel
Strand 5	D	148	150	parallel
Strand 6	D	311	312	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	211	first strand
Strand 2	D	173	179	parallel
Strand 3	D	235	238	parallel
Strand 4	D	261	265	parallel
Strand 5	D	282	284	parallel
Strand 6	D	318	320	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GT9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GT9