Analysis of interatomic Contacts of Structural Units in PDB entry:
6GTC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GTC entry

There are 4 chains in PDB entry 6GTC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 1299
B
 A -19 A 8
C
 T -8 G 11
D
 C -11 G 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 6GTC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
26 35Right-handed alpha
Helix 3
AA3
A
37 41Right-handed 310
Helix 4
AA4
A
45 49Right-handed 310
Helix 5
AA5
A
50 64Right-handed alpha
Helix 6
AA6
A
73 89Right-handed alpha
Helix 7
AA7
A
94 107Right-handed alpha
Helix 8
AA8
A
109 114Right-handed alpha
Helix 9
AA9
A
124 128Right-handed 310
Helix 10
AB1
A
136 148Right-handed alpha
Helix 11
AB2
A
161 170Right-handed alpha
Helix 12
AB3
A
207 212Right-handed alpha
Helix 13
AB4
A
212 223Right-handed alpha
Helix 14
AB5
A
230 238Right-handed alpha
Helix 15
AB6
A
277 285Right-handed alpha
Helix 16
AB7
A
299 311Right-handed alpha
Helix 17
AB8
A
369 381Right-handed alpha
Helix 18
AB9
A
398 408Right-handed alpha
Helix 19
AC1
A
412 426Right-handed alpha
Helix 20
AC2
A
453 464Right-handed alpha
Helix 21
AC3
A
465 467Right-handed 310
Helix 22
AC4
A
475 483Right-handed alpha
Helix 23
AC5
A
487 499Right-handed alpha
Helix 24
AC6
A
519 522Right-handed 310
Helix 25
AC7
A
523 528Right-handed alpha
Helix 26
AC8
A
560 565Right-handed alpha
Helix 27
AC9
A
575 580Right-handed alpha
Helix 28
AD1
A
668 674Right-handed alpha
Helix 29
AD2
A
679 683Right-handed 310
Helix 30
AD3
A
685 695Right-handed alpha
Helix 31
AD4
A
715 718Right-handed 310
Helix 32
AD5
A
719 729Right-handed alpha
Helix 33
AD6
A
743 747Right-handed 310
Helix 34
AD7
A
750 758Right-handed alpha
Helix 35
AD8
A
770 775Right-handed alpha
Helix 36
AD9
A
776 781Right-handed alpha
Helix 37
AE1
A
802 807Right-handed alpha
Helix 38
AE2
A
808 811Right-handed 310
Helix 39
AE3
A
813 819Right-handed alpha
Helix 40
AE4
A
870 874Right-handed 310
Helix 41
AE5
A
895 902Right-handed alpha
Helix 42
AE6
A
903 911Right-handed 310
Helix 43
AE7
A
953 959Right-handed alpha
Helix 44
AE8
A
970 994Right-handed alpha
Helix 45
AE9
A
994 999Right-handed alpha
Helix 46
AF1
A
1021 1026Right-handed alpha
Helix 47
AF2
A
1064 1068Right-handed 310
Helix 48
AF3
A
1103 1112Right-handed alpha
Helix 49
AF4
A
1129 1133Right-handed 310
Helix 50
AF5
A
1169 1180Right-handed alpha
Helix 51
AF6
A
1191 1198Right-handed alpha
Helix 52
AF7
A
1200 1212Right-handed alpha
Helix 53
AF8
A
1242 1246Right-handed 310
Helix 54
AF9
A
1256 1275Right-handed alpha
Helix 55
AG1
A
1287 1295Right-handed alpha
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There are 13 sheets in PDB entry 6GTC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 597first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 885anti-parallel
Strand 4
A
16 23anti-parallel
Strand 5
A
783 789anti-parallel
Strand 6
A
628 633anti-parallel
Strand 7
A
619 623anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 597first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 885anti-parallel
Strand 4
A
823 824anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
256 257anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 290first strand
Strand 2
A
295 297anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
450 452anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 661first strand
Strand 2
A
762 766anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
841 843first strand
Strand 2
A
867 868anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
927 929first strand
Strand 2
A
935 938anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
943 944first strand
Strand 2
A
951 952anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1003 1006first strand
Strand 2
A
1074 1077parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1117first strand
Strand 2
A
1124 1127anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1150 1153first strand
Strand 2
A
1165 1168anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1219 1220first strand
Strand 2
A
1227 1228anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il