Analysis of interatomic Contacts of Structural Units in PDB entry:
6GTD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GTD entry

There are 4 chains in PDB entry 6GTD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 1299
B
 A -19 A 8
C
 T -8 G 11
D
 C -11 T 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 6GTD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
36 40Right-handed 310
Helix 3
AA3
A
49 54Right-handed alpha
Helix 4
AA4
A
59 64Right-handed alpha
Helix 5
AA5
A
72 88Right-handed alpha
Helix 6
AA6
A
95 109Right-handed alpha
Helix 7
AA7
A
109 114Right-handed alpha
Helix 8
AA8
A
115 116Right-handed 310
Helix 9
AA9
A
117 121Right-handed 310
Helix 10
AB1
A
136 149Right-handed alpha
Helix 11
AB2
A
161 163Right-handed 310
Helix 12
AB3
A
164 171Right-handed alpha
Helix 13
AB4
A
207 215Right-handed alpha
Helix 14
AB5
A
218 224Right-handed 310
Helix 15
AB6
A
230 235Right-handed alpha
Helix 16
AB7
A
239 241Right-handed 310
Helix 17
AB8
A
281 286Right-handed alpha
Helix 18
AB9
A
305 312Right-handed alpha
Helix 19
AC1
A
356 361Right-handed 310
Helix 20
AC2
A
370 377Right-handed alpha
Helix 21
AC3
A
380 384Right-handed 310
Helix 22
AC4
A
396 401Right-handed alpha
Helix 23
AC5
A
401 408Right-handed alpha
Helix 24
AC6
A
409 414Right-handed alpha
Helix 25
AC7
A
415 418Right-handed 310
Helix 26
AC8
A
421 426Right-handed alpha
Helix 27
AC9
A
438 443Right-handed 310
Helix 28
AD1
A
453 462Right-handed alpha
Helix 29
AD2
A
463 466Right-handed 310
Helix 30
AD3
A
468 472Right-handed 310
Helix 31
AD4
A
476 484Right-handed alpha
Helix 32
AD5
A
487 495Right-handed alpha
Helix 33
AD6
A
496 498Right-handed 310
Helix 34
AD7
A
516 518Right-handed 310
Helix 35
AD8
A
519 526Right-handed alpha
Helix 36
AD9
A
530 532Right-handed 310
Helix 37
AE1
A
533 540Right-handed alpha
Helix 38
AE2
A
558 562Right-handed 310
Helix 39
AE3
A
565 570Right-handed alpha
Helix 40
AE4
A
575 579Right-handed 310
Helix 41
AE5
A
642 649Right-handed alpha
Helix 42
AE6
A
668 672Right-handed 310
Helix 43
AE7
A
675 679Right-handed 310
Helix 44
AE8
A
685 690Right-handed alpha
Helix 45
AE9
A
713 730Right-handed alpha
Helix 46
AF1
A
733 738Right-handed 310
Helix 47
AF2
A
749 754Right-handed alpha
Helix 48
AF3
A
772 781Right-handed alpha
Helix 49
AF4
A
871 875Right-handed 310
Helix 50
AF5
A
895 904Right-handed alpha
Helix 51
AF6
A
955 961Right-handed alpha
Helix 52
AF7
A
970 985Right-handed alpha
Helix 53
AF8
A
985 997Right-handed alpha
Helix 54
AF9
A
1063 1067Right-handed 310
Helix 55
AG1
A
1101 1112Right-handed alpha
Helix 56
AG2
A
1174 1179Right-handed alpha
Helix 57
AG3
A
1191 1198Right-handed alpha
Helix 58
AG4
A
1200 1213Right-handed alpha
Helix 59
AG5
A
1261 1267Right-handed alpha
Helix 60
AG6
A
1269 1275Right-handed alpha
Helix 61
AG7
A
1287 1297Right-handed alpha
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There are 8 sheets in PDB entry 6GTD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
256 257anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 288first strand
Strand 2
A
297 298anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
368 369anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
450 452anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 598first strand
Strand 2
A
830 831anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 661first strand
Strand 2
A
762 766anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
916 917first strand
Strand 2
A
925 929anti-parallel
Strand 3
A
935 940anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1150 1152first strand
Strand 2
A
1166 1168anti-parallel
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