Analysis of interatomic Contacts of Structural Units in PDB entry:
6GTE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GTE entry

There are 4 chains in PDB entry 6GTE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3ASN 1299
B
 A -19 U 9
C
 A -9 G 11
D
 C -11 G 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 6GTE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 32Right-handed alpha
Helix 2
AA2
A
49 53Right-handed 310
Helix 3
AA3
A
57 63Right-handed alpha
Helix 4
AA4
A
75 85Right-handed alpha
Helix 5
AA5
A
97 114Right-handed alpha
Helix 6
AA6
A
119 123Right-handed 310
Helix 7
AA7
A
136 143Right-handed alpha
Helix 8
AA8
A
161 171Right-handed alpha
Helix 9
AA9
A
199 207Right-handed alpha
Helix 10
AB1
A
211 220Right-handed alpha
Helix 11
AB2
A
229 234Right-handed alpha
Helix 12
AB3
A
265 269Right-handed 310
Helix 13
AB4
A
274 285Right-handed alpha
Helix 14
AB5
A
299 302Right-handed 310
Helix 15
AB6
A
303 308Right-handed alpha
Helix 16
AB7
A
313 320Right-handed 310
Helix 17
AB8
A
346 357Right-handed alpha
Helix 18
AB9
A
357 362Right-handed alpha
Helix 19
AC1
A
369 378Right-handed alpha
Helix 20
AC2
A
397 399Right-handed 310
Helix 21
AC3
A
400 407Right-handed alpha
Helix 22
AC4
A
412 416Right-handed 310
Helix 23
AC5
A
417 422Right-handed alpha
Helix 24
AC6
A
453 460Right-handed alpha
Helix 25
AC7
A
460 465Right-handed alpha
Helix 26
AC8
A
484 495Right-handed alpha
Helix 27
AC9
A
496 498Right-handed 310
Helix 28
AD1
A
499 506Right-handed alpha
Helix 29
AD2
A
516 521Right-handed 310
Helix 30
AD3
A
522 528Right-handed alpha
Helix 31
AD4
A
529 532Right-handed 310
Helix 32
AD5
A
533 540Right-handed alpha
Helix 33
AD6
A
541 544Right-handed 310
Helix 34
AD7
A
564 569Right-handed alpha
Helix 35
AD8
A
570 573Right-handed 310
Helix 36
AD9
A
574 580Right-handed alpha
Helix 37
AE1
A
582 588Right-handed alpha
Helix 38
AE2
A
610 612Right-handed 310
Helix 39
AE3
A
613 618Right-handed alpha
Helix 40
AE4
A
643 648Right-handed alpha
Helix 41
AE5
A
664 673Right-handed alpha
Helix 42
AE6
A
678 683Right-handed alpha
Helix 43
AE7
A
685 695Right-handed alpha
Helix 44
AE8
A
714 725Right-handed alpha
Helix 45
AE9
A
733 738Right-handed 310
Helix 46
AF1
A
743 747Right-handed 310
Helix 47
AF2
A
750 755Right-handed alpha
Helix 48
AF3
A
771 781Right-handed alpha
Helix 49
AF4
A
807 812Right-handed alpha
Helix 50
AF5
A
895 905Right-handed alpha
Helix 51
AF6
A
953 961Right-handed alpha
Helix 52
AF7
A
979 999Right-handed alpha
Helix 53
AF8
A
1025 1033Right-handed alpha
Helix 54
AF9
A
1102 1111Right-handed alpha
Helix 55
AG1
A
1129 1133Right-handed 310
Helix 56
AG2
A
1169 1178Right-handed alpha
Helix 57
AG3
A
1191 1198Right-handed alpha
Helix 58
AG4
A
1200 1213Right-handed alpha
Helix 59
AG5
A
1242 1246Right-handed 310
Helix 60
AG6
A
1256 1261Right-handed alpha
Helix 61
AG7
A
1261 1266Right-handed alpha
Helix 62
AG8
A
1268 1274Right-handed alpha
Helix 63
AG9
A
1287 1295Right-handed alpha
Helix 64
AH1
A
1296 1298Right-handed 310
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There are 6 sheets in PDB entry 6GTE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 598first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 882anti-parallel
Strand 4
A
17 23anti-parallel
Strand 5
A
785 789anti-parallel
Strand 6
A
628 631anti-parallel
Strand 7
A
620 623anti-parallel
Strand 8
A
653 661anti-parallel
Strand 9
A
762 766anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 598first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 882anti-parallel
Strand 4
A
17 23anti-parallel
Strand 5
A
785 789anti-parallel
Strand 6
A
628 631anti-parallel
Strand 7
A
620 623anti-parallel
Strand 8
A
653 661anti-parallel
Strand 9
A
769 770anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
822 824first strand
Strand 2
A
884 886anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
912 913first strand
Strand 2
A
1001 1002parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
925 929first strand
Strand 2
A
935 940anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1125 1126first strand
Strand 2
A
1144 1145anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il