Analysis of interatomic Contacts of Structural Units in PDB entry:
6GTF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GTF entry

There are 4 chains in PDB entry 6GTF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3ASN 1300
B
 A -19 U 9
C
 A -9 G 11
D
 C -11 A 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 6GTF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
45 52Right-handed alpha
Helix 3
AA3
A
56 61Right-handed alpha
Helix 4
AA4
A
62 65Right-handed 310
Helix 5
AA5
A
74 89Right-handed alpha
Helix 6
AA6
A
91 114Right-handed alpha
Helix 7
AA7
A
119 123Right-handed 310
Helix 8
AA8
A
138 143Right-handed alpha
Helix 9
AA9
A
144 149Right-handed alpha
Helix 10
AB1
A
165 171Right-handed alpha
Helix 11
AB2
A
182 187Right-handed alpha
Helix 12
AB3
A
199 204Right-handed alpha
Helix 13
AB4
A
217 222Right-handed alpha
Helix 14
AB5
A
268 272Right-handed 310
Helix 15
AB6
A
299 303Right-handed 310
Helix 16
AB7
A
313 319Right-handed 310
Helix 17
AB8
A
346 359Right-handed alpha
Helix 18
AB9
A
370 375Right-handed alpha
Helix 19
AC1
A
376 382Right-handed alpha
Helix 20
AC2
A
397 402Right-handed alpha
Helix 21
AC3
A
416 420Right-handed 310
Helix 22
AC4
A
452 466Right-handed alpha
Helix 23
AC5
A
476 481Right-handed 310
Helix 24
AC6
A
487 493Right-handed alpha
Helix 25
AC7
A
494 496Right-handed 310
Helix 26
AC8
A
497 502Right-handed 310
Helix 27
AC9
A
503 507Right-handed 310
Helix 28
AD1
A
519 522Right-handed 310
Helix 29
AD2
A
523 528Right-handed alpha
Helix 30
AD3
A
531 536Right-handed alpha
Helix 31
AD4
A
539 544Right-handed 310
Helix 32
AD5
A
561 572Right-handed alpha
Helix 33
AD6
A
610 612Right-handed 310
Helix 34
AD7
A
613 618Right-handed alpha
Helix 35
AD8
A
634 638Right-handed 310
Helix 36
AD9
A
642 649Right-handed alpha
Helix 37
AE1
A
668 673Right-handed alpha
Helix 38
AE2
A
678 683Right-handed alpha
Helix 39
AE3
A
685 695Right-handed alpha
Helix 40
AE4
A
714 728Right-handed alpha
Helix 41
AE5
A
750 755Right-handed alpha
Helix 42
AE6
A
755 760Right-handed alpha
Helix 43
AE7
A
770 779Right-handed alpha
Helix 44
AE8
A
807 812Right-handed alpha
Helix 45
AE9
A
887 891Right-handed 310
Helix 46
AF1
A
898 907Right-handed alpha
Helix 47
AF2
A
952 954Right-handed 310
Helix 48
AF3
A
955 962Right-handed alpha
Helix 49
AF4
A
976 999Right-handed alpha
Helix 50
AF5
A
1025 1033Right-handed alpha
Helix 51
AF6
A
1102 1110Right-handed alpha
Helix 52
AF7
A
1170 1181Right-handed alpha
Helix 53
AF8
A
1191 1197Right-handed alpha
Helix 54
AF9
A
1200 1212Right-handed alpha
Helix 55
AG1
A
1257 1275Right-handed alpha
Helix 56
AG2
A
1287 1295Right-handed alpha
Helix 57
AG3
A
1296 1298Right-handed 310
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There are 4 sheets in PDB entry 6GTF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 598first strand
Strand 2
A
830 832anti-parallel
Strand 3
A
878 883anti-parallel
Strand 4
A
16 23anti-parallel
Strand 5
A
784 789anti-parallel
Strand 6
A
629 632anti-parallel
Strand 7
A
619 623anti-parallel
Strand 8
A
655 661anti-parallel
Strand 9
A
762 768anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
912 913first strand
Strand 2
A
1001 1002parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
927 928first strand
Strand 2
A
937 938anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1125 1129first strand
Strand 2
A
1141 1145anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il