Analysis of interatomic Contacts of Structural Units in PDB entry:
6GTG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GTG entry

There are 4 chains in PDB entry 6GTG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3ASN 1300
B
 A -19 A 21
C
 G -20 G 11
D
 C -11 T 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 6GTG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
48 52Right-handed 310
Helix 3
AA3
A
53 58Right-handed alpha
Helix 4
AA4
A
74 85Right-handed alpha
Helix 5
AA5
A
95 110Right-handed alpha
Helix 6
AA6
A
116 120Right-handed 310
Helix 7
AA7
A
136 144Right-handed alpha
Helix 8
AA8
A
164 171Right-handed alpha
Helix 9
AA9
A
175 180Right-handed 310
Helix 10
AB1
A
198 205Right-handed alpha
Helix 11
AB2
A
208 217Right-handed alpha
Helix 12
AB3
A
218 223Right-handed alpha
Helix 13
AB4
A
236 240Right-handed 310
Helix 14
AB5
A
265 272Right-handed 310
Helix 15
AB6
A
274 278Right-handed 310
Helix 16
AB7
A
281 286Right-handed alpha
Helix 17
AB8
A
299 304Right-handed alpha
Helix 18
AB9
A
304 312Right-handed alpha
Helix 19
AC1
A
315 319Right-handed 310
Helix 20
AC2
A
344 349Right-handed alpha
Helix 21
AC3
A
350 360Right-handed alpha
Helix 22
AC4
A
370 374Right-handed 310
Helix 23
AC5
A
397 407Right-handed alpha
Helix 24
AC6
A
413 422Right-handed alpha
Helix 25
AC7
A
453 464Right-handed alpha
Helix 26
AC8
A
474 482Right-handed alpha
Helix 27
AC9
A
484 486Right-handed 310
Helix 28
AD1
A
487 492Right-handed alpha
Helix 29
AD2
A
494 499Right-handed alpha
Helix 30
AD3
A
516 520Right-handed 310
Helix 31
AD4
A
522 535Right-handed alpha
Helix 32
AD5
A
536 539Right-handed 310
Helix 33
AD6
A
564 573Right-handed alpha
Helix 34
AD7
A
578 587Right-handed alpha
Helix 35
AD8
A
610 612Right-handed 310
Helix 36
AD9
A
613 618Right-handed alpha
Helix 37
AE1
A
642 648Right-handed alpha
Helix 38
AE2
A
664 673Right-handed alpha
Helix 39
AE3
A
678 683Right-handed alpha
Helix 40
AE4
A
687 695Right-handed alpha
Helix 41
AE5
A
718 723Right-handed alpha
Helix 42
AE6
A
750 759Right-handed alpha
Helix 43
AE7
A
770 779Right-handed alpha
Helix 44
AE8
A
888 891Right-handed 310
Helix 45
AE9
A
895 907Right-handed alpha
Helix 46
AF1
A
953 971Right-handed alpha
Helix 47
AF2
A
977 999Right-handed alpha
Helix 48
AF3
A
1009 1016Right-handed alpha
Helix 49
AF4
A
1017 1019Right-handed 310
Helix 50
AF5
A
1025 1033Right-handed alpha
Helix 51
AF6
A
1102 1109Right-handed alpha
Helix 52
AF7
A
1129 1133Right-handed 310
Helix 53
AF8
A
1170 1181Right-handed alpha
Helix 54
AF9
A
1191 1198Right-handed alpha
Helix 55
AG1
A
1202 1215Right-handed alpha
Helix 56
AG2
A
1242 1246Right-handed 310
Helix 57
AG3
A
1254 1266Right-handed alpha
Helix 58
AG4
A
1268 1275Right-handed alpha
Helix 59
AG5
A
1290 1297Right-handed alpha
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There are 8 sheets in PDB entry 6GTG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
879 886anti-parallel
Strand 3
A
829 833anti-parallel
Strand 4
A
595 597anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
879 886anti-parallel
Strand 3
A
822 824anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
783 789anti-parallel
Strand 3
A
628 633anti-parallel
Strand 4
A
620 623anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
655 661first strand
Strand 2
A
762 768anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
915 916first strand
Strand 2
A
1004 1006parallel
Strand 3
A
1074 1077parallel
Strand 4
A
1070 1071anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
925 927first strand
Strand 2
A
938 940anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
943 944first strand
Strand 2
A
951 952anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1116 1117first strand
Strand 2
A
1124 1125anti-parallel
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