Analysis of interatomic Contacts of Structural Units in PDB entry:
6GTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GTM entry

There are 4 chains in PDB entry 6GTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 309
B
 MET 1HIS 309
C
 MET 1HIS 309
D
 MET 1HIS 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6GTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 41Right-handed alpha
Helix 2
AA2
A
52 66Right-handed alpha
Helix 3
AA3
A
67 71Right-handed 310
Helix 4
AA4
A
80 84Right-handed 310
Helix 5
AA5
A
85 96Right-handed alpha
Helix 6
AA6
A
96 101Right-handed alpha
Helix 7
AA7
A
119 132Right-handed alpha
Helix 8
AA8
A
147 153Right-handed alpha
Helix 9
AA9
A
168 181Right-handed alpha
Helix 10
AB1
A
192 196Right-handed 310
Helix 11
AB2
A
223 228Right-handed alpha
Helix 12
AB3
A
232 242Right-handed alpha
Helix 13
AB4
A
256 267Right-handed alpha
Helix 14
AB5
A
272 290Right-handed alpha
Helix 15
AB6
B
27 41Right-handed alpha
Helix 16
AB7
B
52 66Right-handed alpha
Helix 17
AB8
B
67 71Right-handed 310
Helix 18
AB9
B
80 84Right-handed 310
Helix 19
AC1
B
85 96Right-handed alpha
Helix 20
AC2
B
96 101Right-handed alpha
Helix 21
AC3
B
119 132Right-handed alpha
Helix 22
AC4
B
147 153Right-handed alpha
Helix 23
AC5
B
168 181Right-handed alpha
Helix 24
AC6
B
192 196Right-handed 310
Helix 25
AC7
B
223 228Right-handed alpha
Helix 26
AC8
B
232 242Right-handed alpha
Helix 27
AC9
B
256 267Right-handed alpha
Helix 28
AD1
B
272 290Right-handed alpha
Helix 29
AD2
C
27 41Right-handed alpha
Helix 30
AD3
C
52 66Right-handed alpha
Helix 31
AD4
C
67 71Right-handed 310
Helix 32
AD5
C
80 84Right-handed 310
Helix 33
AD6
C
85 96Right-handed alpha
Helix 34
AD7
C
96 101Right-handed alpha
Helix 35
AD8
C
119 132Right-handed alpha
Helix 36
AD9
C
147 153Right-handed alpha
Helix 37
AE1
C
168 181Right-handed alpha
Helix 38
AE2
C
192 196Right-handed 310
Helix 39
AE3
C
223 228Right-handed alpha
Helix 40
AE4
C
232 242Right-handed alpha
Helix 41
AE5
C
256 267Right-handed alpha
Helix 42
AE6
C
272 290Right-handed alpha
Helix 43
AE7
D
27 41Right-handed alpha
Helix 44
AE8
D
52 66Right-handed alpha
Helix 45
AE9
D
67 71Right-handed 310
Helix 46
AF1
D
80 84Right-handed 310
Helix 47
AF2
D
85 96Right-handed alpha
Helix 48
AF3
D
96 101Right-handed alpha
Helix 49
AF4
D
119 132Right-handed alpha
Helix 50
AF5
D
147 153Right-handed alpha
Helix 51
AF6
D
168 181Right-handed alpha
Helix 52
AF7
D
192 196Right-handed 310
Helix 53
AF8
D
223 228Right-handed alpha
Helix 54
AF9
D
232 242Right-handed alpha
Helix 55
AG1
D
256 267Right-handed alpha
Helix 56
AG2
D
272 290Right-handed alpha
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There are 8 sheets in PDB entry 6GTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
12 14anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
45 49parallel
Strand 3
A
72 77parallel
Strand 4
A
107 111parallel
Strand 5
A
138 141parallel
Strand 6
A
156 161parallel
Strand 7
A
184 187parallel
Strand 8
A
249 253parallel
Strand 9
A
16 21parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
12 14anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 21first strand
Strand 2
B
45 49parallel
Strand 3
B
72 77parallel
Strand 4
B
107 111parallel
Strand 5
B
138 141parallel
Strand 6
B
156 161parallel
Strand 7
B
184 187parallel
Strand 8
B
249 253parallel
Strand 9
B
16 21parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
12 14anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 21first strand
Strand 2
C
45 49parallel
Strand 3
C
72 77parallel
Strand 4
C
107 111parallel
Strand 5
C
138 141parallel
Strand 6
C
156 161parallel
Strand 7
C
184 187parallel
Strand 8
C
249 253parallel
Strand 9
C
16 21parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
12 14anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 21first strand
Strand 2
D
45 49parallel
Strand 3
D
72 77parallel
Strand 4
D
107 111parallel
Strand 5
D
138 141parallel
Strand 6
D
156 161parallel
Strand 7
D
184 187parallel
Strand 8
D
249 253parallel
Strand 9
D
16 21parallel
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