Analysis of interatomic Contacts of Structural Units in PDB entry:
6GTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GTP entry

There is 1 chain in PDB entry 6GTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -8THR 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6GTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 33Right-handed alpha
Helix 2
AA2
A
33 40Right-handed alpha
Helix 3
AA3
A
99 102Right-handed 310
Helix 4
AA4
A
105 126Right-handed alpha
Helix 5
AA5
A
136 146Right-handed alpha
Helix 6
AA6
A
163 171Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6GTP.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
57 71anti-parallel
Strand 4
A
84 97anti-parallel
Strand 5
A
129 133parallel
Strand 6
A
158 162anti-parallel
Strand 7
A
149 150anti-parallel
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