Analysis of interatomic Contacts of Structural Units in PDB entry:
6GU6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GU6 entry

There are 2 chains in PDB entry 6GU6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 291
B
 GLN 5PRO 74
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 6GU6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 58Right-handed alpha
Helix 2
AA2
A
87 93Right-handed alpha
Helix 3
AA3
A
101 121Right-handed alpha
Helix 4
AA4
A
130 132Right-handed 310
Helix 5
AA5
A
148 153Right-handed alpha
Helix 6
AA6
A
163 168Right-handed alpha
Helix 7
AA7
A
171 176Right-handed alpha
Helix 8
AA8
A
183 200Right-handed alpha
Helix 9
AA9
A
208 221Right-handed alpha
Helix 10
AB1
A
230 234Right-handed 310
Helix 11
AB2
A
249 253Right-handed 310
Helix 12
AB3
A
257 268Right-handed alpha
Helix 13
AB4
A
271 275Right-handed 310
Helix 14
AB5
A
277 283Right-handed alpha
Helix 15
AB6
A
284 288Right-handed 310
Helix 16
AB7
B
25 32Right-handed alpha
Helix 17
AB8
B
39 46Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6GU6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 13first strand
Strand 2
A
16 23anti-parallel
Strand 3
A
29 36anti-parallel
Strand 4
A
75 81anti-parallel
Strand 5
A
66 72anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
134 136anti-parallel
Strand 3
A
142 144anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
12 13anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
66 72anti-parallel
Strand 4
B
55 58anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il