Analysis of interatomic Contacts of Structural Units in PDB entry:
6GU7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GU7 entry

There are 8 chains in PDB entry 6GU7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 293
B	GLN 5	LYS 75
C	MET 1	ASP 291
D	GLN 5	LYS 75
E	MET 1	ASN 292
F	LYS 4	PRO 74
G	MET 1	ASP 291
H	LYS 4	LYS 75

There are 60 helices in PDB entry 6GU7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	57	Right-handed alpha
Helix 2	AA2	A	87	93	Right-handed alpha
Helix 3	AA3	A	101	122	Right-handed alpha
Helix 4	AA4	A	130	132	Right-handed 310
Helix 5	AA5	A	148	153	Right-handed alpha
Helix 6	AA6	A	166	170	Right-handed 310
Helix 7	AA7	A	171	176	Right-handed alpha
Helix 8	AA8	A	183	200	Right-handed alpha
Helix 9	AA9	A	208	221	Right-handed alpha
Helix 10	AB1	A	230	234	Right-handed 310
Helix 11	AB2	A	257	268	Right-handed alpha
Helix 12	AB3	A	277	283	Right-handed alpha
Helix 13	AB4	A	284	288	Right-handed 310
Helix 14	AB5	B	28	32	Right-handed 310
Helix 15	AB6	B	39	46	Right-handed alpha
Helix 16	AB7	C	46	57	Right-handed alpha
Helix 17	AB8	C	87	93	Right-handed alpha
Helix 18	AB9	C	101	122	Right-handed alpha
Helix 19	AC1	C	130	132	Right-handed 310
Helix 20	AC2	C	148	153	Right-handed alpha
Helix 21	AC3	C	164	169	Right-handed alpha
Helix 22	AC4	C	171	176	Right-handed alpha
Helix 23	AC5	C	183	200	Right-handed alpha
Helix 24	AC6	C	208	221	Right-handed alpha
Helix 25	AC7	C	230	234	Right-handed 310
Helix 26	AC8	C	257	268	Right-handed alpha
Helix 27	AC9	C	277	283	Right-handed alpha
Helix 28	AD1	C	284	288	Right-handed 310
Helix 29	AD2	D	28	32	Right-handed 310
Helix 30	AD3	D	39	46	Right-handed alpha
Helix 31	AD4	E	46	57	Right-handed alpha
Helix 32	AD5	E	87	93	Right-handed alpha
Helix 33	AD6	E	101	122	Right-handed alpha
Helix 34	AD7	E	130	132	Right-handed 310
Helix 35	AD8	E	148	154	Right-handed alpha
Helix 36	AD9	E	166	170	Right-handed 310
Helix 37	AE1	E	171	176	Right-handed alpha
Helix 38	AE2	E	183	200	Right-handed alpha
Helix 39	AE3	E	208	221	Right-handed alpha
Helix 40	AE4	E	230	234	Right-handed 310
Helix 41	AE5	E	257	268	Right-handed alpha
Helix 42	AE6	E	277	283	Right-handed alpha
Helix 43	AE7	E	284	288	Right-handed 310
Helix 44	AE8	F	28	32	Right-handed 310
Helix 45	AE9	F	39	46	Right-handed alpha
Helix 46	AF1	G	46	57	Right-handed alpha
Helix 47	AF2	G	87	93	Right-handed alpha
Helix 48	AF3	G	101	122	Right-handed alpha
Helix 49	AF4	G	130	132	Right-handed 310
Helix 50	AF5	G	148	153	Right-handed alpha
Helix 51	AF6	G	166	170	Right-handed 310
Helix 52	AF7	G	171	176	Right-handed alpha
Helix 53	AF8	G	183	200	Right-handed alpha
Helix 54	AF9	G	208	221	Right-handed alpha
Helix 55	AG1	G	230	234	Right-handed 310
Helix 56	AG2	G	257	268	Right-handed alpha
Helix 57	AG3	G	277	283	Right-handed alpha
Helix 58	AG4	G	284	288	Right-handed 310
Helix 59	AG5	H	28	32	Right-handed 310
Helix 60	AG6	H	39	46	Right-handed alpha

There are 20 sheets in PDB entry 6GU7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	12	first strand
Strand 2	A	17	23	anti-parallel
Strand 3	A	29	36	anti-parallel
Strand 4	A	75	81	anti-parallel
Strand 5	A	66	72	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	E	180	181	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	134	136	anti-parallel
Strand 3	A	142	144	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	E	40	41	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	17	23	anti-parallel
Strand 3	B	12	13	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	17	23	anti-parallel
Strand 3	B	66	72	anti-parallel
Strand 4	B	55	58	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	12	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	29	36	anti-parallel
Strand 4	C	75	81	anti-parallel
Strand 5	C	66	72	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	G	180	181	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	C	134	136	anti-parallel
Strand 3	C	142	144	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	181	first strand
Strand 2	G	40	41	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	17	23	anti-parallel
Strand 3	D	12	13	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	17	23	anti-parallel
Strand 3	D	66	72	anti-parallel
Strand 4	D	55	58	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	12	first strand
Strand 2	E	17	23	anti-parallel
Strand 3	E	29	36	anti-parallel
Strand 4	E	75	81	anti-parallel
Strand 5	E	66	71	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	86	first strand
Strand 2	E	134	136	anti-parallel
Strand 3	E	142	144	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	8	first strand
Strand 2	F	17	23	anti-parallel
Strand 3	F	12	13	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	8	first strand
Strand 2	F	17	23	anti-parallel
Strand 3	F	66	72	anti-parallel
Strand 4	F	55	58	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	12	first strand
Strand 2	G	17	23	anti-parallel
Strand 3	G	29	36	anti-parallel
Strand 4	G	75	81	anti-parallel
Strand 5	G	66	72	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	85	86	first strand
Strand 2	G	134	136	anti-parallel
Strand 3	G	142	144	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	8	first strand
Strand 2	H	17	23	anti-parallel
Strand 3	H	12	13	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	8	first strand
Strand 2	H	17	23	anti-parallel
Strand 3	H	66	72	anti-parallel
Strand 4	H	55	58	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GU7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GU7