Analysis of interatomic Contacts of Structural Units in PDB entry:
6GUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GUP entry

There are 2 chains in PDB entry 6GUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 6ALA 354
B
 TRP 6VAL 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6GUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 61Right-handed alpha
Helix 2
AA2
A
73 78Right-handed alpha
Helix 3
AA3
A
84 108Right-handed alpha
Helix 4
AA4
A
123 134Right-handed alpha
Helix 5
AA5
A
166 178Right-handed alpha
Helix 6
AA6
A
183 205Right-handed alpha
Helix 7
AA7
A
214 222Right-handed alpha
Helix 8
AA8
A
229 238Right-handed alpha
Helix 9
AA9
A
256 262Right-handed alpha
Helix 10
AB1
A
263 265Right-handed 310
Helix 11
AB2
A
266 271Right-handed alpha
Helix 12
AB3
A
293 307Right-handed alpha
Helix 13
AB4
A
333 353Right-handed alpha
Helix 14
AB5
B
53 62Right-handed alpha
Helix 15
AB6
B
73 79Right-handed alpha
Helix 16
AB7
B
84 108Right-handed alpha
Helix 17
AB8
B
109 113Right-handed 310
Helix 18
AB9
B
123 134Right-handed alpha
Helix 19
AC1
B
166 178Right-handed alpha
Helix 20
AC2
B
183 202Right-handed alpha
Helix 21
AC3
B
214 222Right-handed alpha
Helix 22
AC4
B
229 238Right-handed alpha
Helix 23
AC5
B
256 262Right-handed alpha
Helix 24
AC6
B
265 271Right-handed alpha
Helix 25
AC7
B
293 306Right-handed alpha
Helix 26
AC8
B
330 332Right-handed 310
Helix 27
AC9
B
333 352Right-handed alpha
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There are 2 sheets in PDB entry 6GUP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 321first strand
Strand 2
A
277 282parallel
Strand 3
A
158 162parallel
Strand 4
A
116 121parallel
Strand 5
A
36 41parallel
Strand 6
A
66 71parallel
Strand 7
A
23 27anti-parallel
Strand 8
A
11 17anti-parallel
Strand 9
B
11 17anti-parallel
Strand 10
B
23 27anti-parallel
Strand 11
B
66 71anti-parallel
Strand 12
B
36 41parallel
Strand 13
B
116 121parallel
Strand 14
B
158 162parallel
Strand 15
B
277 282parallel
Strand 16
B
319 321parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 212first strand
Strand 2
B
210 212anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il