Analysis of interatomic Contacts of Structural Units in PDB entry:
6GUT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GUT entry

There are 2 chains in PDB entry 6GUT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 8GLY 250
B
 ASN 8GLN 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6GUT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 99Right-handed 310
Helix 2
AA2
A
122 134Right-handed alpha
Helix 3
AA3
A
146 156Right-handed alpha
Helix 4
AA4
A
157 172Right-handed alpha
Helix 5
AA5
A
211 214Right-handed 310
Helix 6
AA6
A
240 244Right-handed 310
Helix 7
AA7
B
36 38Right-handed 310
Helix 8
AA8
B
96 100Right-handed 310
Helix 9
AA9
B
120 134Right-handed alpha
Helix 10
AB1
B
145 156Right-handed alpha
Helix 11
AB2
B
157 172Right-handed alpha
Helix 12
AB3
B
211 214Right-handed 310
Helix 13
AB4
B
240 244Right-handed 310
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There are 6 sheets in PDB entry 6GUT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
31 40anti-parallel
Strand 3
A
47 60anti-parallel
Strand 4
A
70 80anti-parallel
Strand 5
A
85 96anti-parallel
Strand 6
A
100 103anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
31 40anti-parallel
Strand 3
A
47 60anti-parallel
Strand 4
A
70 80anti-parallel
Strand 5
A
85 96anti-parallel
Strand 6
A
112 115anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 201first strand
Strand 2
A
204 209anti-parallel
Strand 3
A
217 225anti-parallel
Strand 4
A
229 237anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
31 34anti-parallel
Strand 3
B
47 60anti-parallel
Strand 4
B
70 80anti-parallel
Strand 5
B
85 94anti-parallel
Strand 6
B
103 104anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
31 34anti-parallel
Strand 3
B
47 60anti-parallel
Strand 4
B
70 80anti-parallel
Strand 5
B
85 94anti-parallel
Strand 6
B
112 115anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 201first strand
Strand 2
B
204 209anti-parallel
Strand 3
B
217 225anti-parallel
Strand 4
B
229 237anti-parallel
Strand 5
B
251 252parallel
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