Analysis of interatomic Contacts of Structural Units in PDB entry:
6GV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GV1 entry

There are 3 chains in PDB entry 6GV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 14LYS 400
H
 LEU 4PRO 216
L
 ASP 1ARG 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6GV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 35Right-handed alpha
Helix 2
AA2
A
36 38Right-handed 310
Helix 3
AA3
A
39 47Right-handed alpha
Helix 4
AA4
A
50 54Right-handed 310
Helix 5
AA5
A
55 66Right-handed alpha
Helix 6
AA6
A
68 80Right-handed alpha
Helix 7
AA7
A
80 99Right-handed alpha
Helix 8
AA8
A
100 102Right-handed 310
Helix 9
AA9
A
104 117Right-handed alpha
Helix 10
AB1
A
119 125Right-handed alpha
Helix 11
AB2
A
125 134Right-handed alpha
Helix 12
AB3
A
135 168Right-handed alpha
Helix 13
AB4
A
171 192Right-handed alpha
Helix 14
AB5
A
204 218Right-handed alpha
Helix 15
AB6
A
218 251Right-handed alpha
Helix 16
AB7
A
253 279Right-handed alpha
Helix 17
AB8
A
283 309Right-handed alpha
Helix 18
AB9
A
312 341Right-handed alpha
Helix 19
AC1
A
345 374Right-handed alpha
Helix 20
AC2
A
376 400Right-handed alpha
Helix 21
AC3
H
86 90Right-handed 310
Helix 22
AC4
H
160 162Right-handed 310
Helix 23
AC5
L
79 83Right-handed 310
Helix 24
AC6
L
123 127Right-handed 310
Helix 25
AC7
L
183 188Right-handed alpha
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There are 11 sheets in PDB entry 6GV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 7first strand
Strand 2
H
18 23anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
111 115parallel
Strand 3
H
91 99anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
111 115parallel
Strand 3
H
91 99anti-parallel
Strand 4
H
102 106anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
124 128first strand
Strand 2
H
139 149anti-parallel
Strand 3
H
179 188anti-parallel
Strand 4
H
167 170anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
155 158first strand
Strand 2
H
198 203anti-parallel
Strand 3
H
208 213anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
44 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
97 98anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
129 137anti-parallel
Strand 3
L
174 182anti-parallel
Strand 4
L
159 160anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
129 137anti-parallel
Strand 3
L
174 182anti-parallel
Strand 4
L
163 164anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
145 149first strand
Strand 2
L
191 198anti-parallel
Strand 3
L
201 210anti-parallel
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