Analysis of interatomic Contacts of Structural Units in PDB entry:
6GV4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GV4 entry

There are 6 chains in PDB entry 6GV4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	U 0	U 7
A	ASN 34	ASN 289
B	SER 25	ARG 219
C	LEU 16	GLN 256
H	VAL 2	VAL 119
L	ILE 2	ARG 109

There are 16 helices in PDB entry 6GV4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	46	Right-handed alpha
Helix 2	AA2	A	113	117	Right-handed 310
Helix 3	AA3	A	142	146	Right-handed 310
Helix 4	AA4	A	153	158	Right-handed alpha
Helix 5	AA5	A	189	195	Right-handed alpha
Helix 6	AA6	A	196	199	Right-handed 310
Helix 7	AA7	A	203	207	Right-handed 310
Helix 8	AA8	B	27	31	Right-handed 310
Helix 9	AA9	B	35	39	Right-handed 310
Helix 10	AB1	B	67	72	Right-handed alpha
Helix 11	AB2	B	100	105	Right-handed 310
Helix 12	AB3	B	142	147	Right-handed 310
Helix 13	AB4	C	63	67	Right-handed 310
Helix 14	AB5	C	74	78	Right-handed 310
Helix 15	AB6	H	28	32	Right-handed 310
Helix 16	AB7	H	74	76	Right-handed 310

There are 16 sheets in PDB entry 6GV4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	74	first strand
Strand 2	A	77	81	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	125	first strand
Strand 2	A	262	272	anti-parallel
Strand 3	A	165	173	anti-parallel
Strand 4	A	219	224	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	140	first strand
Strand 2	A	242	252	anti-parallel
Strand 3	A	180	188	anti-parallel
Strand 4	A	209	213	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	233	234	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	C	189	194	anti-parallel
Strand 3	C	142	149	anti-parallel
Strand 4	C	230	239	anti-parallel
Strand 5	C	83	84	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	C	189	194	anti-parallel
Strand 3	C	142	149	anti-parallel
Strand 4	C	230	239	anti-parallel
Strand 5	C	104	106	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	83	first strand
Strand 2	B	193	209	anti-parallel
Strand 3	B	107	121	anti-parallel
Strand 4	B	170	171	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	83	first strand
Strand 2	B	193	209	anti-parallel
Strand 3	B	107	121	anti-parallel
Strand 4	B	156	161	anti-parallel
Strand 5	C	50	51	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	92	first strand
Strand 2	B	180	185	anti-parallel
Strand 3	B	126	132	anti-parallel
Strand 4	B	149	152	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	120	first strand
Strand 2	C	211	222	anti-parallel
Strand 3	C	155	164	anti-parallel
Strand 4	C	180	183	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	204	first strand
Strand 2	C	135	139	anti-parallel
Strand 3	C	244	248	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	78	82	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	115	118	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	104	107	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GV4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GV4