Analysis of interatomic Contacts of Structural Units in PDB entry:
6GVB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GVB entry

There are 4 chains in PDB entry 6GVB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 395
B	MET 1	PRO 392
C	MET 1	PRO 394
D	MET 1	PRO 394

There are 72 helices in PDB entry 6GVB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	20	Right-handed 310
Helix 2	AA2	A	21	35	Right-handed alpha
Helix 3	AA3	A	45	50	Right-handed alpha
Helix 4	AA4	A	57	73	Right-handed alpha
Helix 5	AA5	A	94	102	Right-handed 310
Helix 6	AA6	A	108	127	Right-handed alpha
Helix 7	AA7	A	140	145	Right-handed 310
Helix 8	AA8	A	160	179	Right-handed alpha
Helix 9	AA9	A	190	195	Right-handed alpha
Helix 10	AB1	A	201	208	Right-handed alpha
Helix 11	AB2	A	221	227	Right-handed alpha
Helix 12	AB3	A	231	248	Right-handed alpha
Helix 13	AB4	A	268	270	Right-handed 310
Helix 14	AB5	A	271	282	Right-handed alpha
Helix 15	AB6	A	308	314	Right-handed 310
Helix 16	AB7	A	324	340	Right-handed alpha
Helix 17	AB8	A	361	366	Right-handed 310
Helix 18	AB9	A	369	383	Right-handed alpha
Helix 19	AC1	B	12	20	Right-handed 310
Helix 20	AC2	B	21	35	Right-handed alpha
Helix 21	AC3	B	45	50	Right-handed alpha
Helix 22	AC4	B	57	74	Right-handed alpha
Helix 23	AC5	B	94	102	Right-handed 310
Helix 24	AC6	B	108	127	Right-handed alpha
Helix 25	AC7	B	140	145	Right-handed 310
Helix 26	AC8	B	160	179	Right-handed alpha
Helix 27	AC9	B	190	195	Right-handed alpha
Helix 28	AD1	B	201	208	Right-handed alpha
Helix 29	AD2	B	221	227	Right-handed alpha
Helix 30	AD3	B	231	248	Right-handed alpha
Helix 31	AD4	B	268	270	Right-handed 310
Helix 32	AD5	B	271	282	Right-handed alpha
Helix 33	AD6	B	308	314	Right-handed 310
Helix 34	AD7	B	324	340	Right-handed alpha
Helix 35	AD8	B	361	366	Right-handed 310
Helix 36	AD9	B	369	383	Right-handed alpha
Helix 37	AE1	C	12	20	Right-handed 310
Helix 38	AE2	C	21	35	Right-handed alpha
Helix 39	AE3	C	45	50	Right-handed alpha
Helix 40	AE4	C	57	73	Right-handed alpha
Helix 41	AE5	C	94	102	Right-handed 310
Helix 42	AE6	C	108	127	Right-handed alpha
Helix 43	AE7	C	140	145	Right-handed 310
Helix 44	AE8	C	160	179	Right-handed alpha
Helix 45	AE9	C	190	195	Right-handed alpha
Helix 46	AF1	C	201	208	Right-handed alpha
Helix 47	AF2	C	221	227	Right-handed alpha
Helix 48	AF3	C	231	248	Right-handed alpha
Helix 49	AF4	C	268	270	Right-handed 310
Helix 50	AF5	C	271	282	Right-handed alpha
Helix 51	AF6	C	308	312	Right-handed 310
Helix 52	AF7	C	324	340	Right-handed alpha
Helix 53	AF8	C	361	366	Right-handed 310
Helix 54	AF9	C	369	383	Right-handed alpha
Helix 55	AG1	D	12	20	Right-handed 310
Helix 56	AG2	D	21	35	Right-handed alpha
Helix 57	AG3	D	45	50	Right-handed alpha
Helix 58	AG4	D	57	73	Right-handed alpha
Helix 59	AG5	D	94	102	Right-handed 310
Helix 60	AG6	D	108	127	Right-handed alpha
Helix 61	AG7	D	140	145	Right-handed 310
Helix 62	AG8	D	160	179	Right-handed alpha
Helix 63	AG9	D	190	195	Right-handed alpha
Helix 64	AH1	D	201	208	Right-handed alpha
Helix 65	AH2	D	221	227	Right-handed alpha
Helix 66	AH3	D	231	248	Right-handed alpha
Helix 67	AH4	D	268	270	Right-handed 310
Helix 68	AH5	D	271	282	Right-handed alpha
Helix 69	AH6	D	308	312	Right-handed 310
Helix 70	AH7	D	324	340	Right-handed alpha
Helix 71	AH8	D	361	366	Right-handed 310
Helix 72	AH9	D	369	383	Right-handed alpha

There are 16 sheets in PDB entry 6GVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	132	136	parallel
Strand 3	A	77	81	parallel
Strand 4	A	39	42	parallel
Strand 5	A	2	6	parallel
Strand 6	A	289	294	parallel
Strand 7	A	255	260	parallel
Strand 8	A	212	216	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	90	91	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	151	152	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	354	first strand
Strand 2	A	388	392	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	132	136	parallel
Strand 3	B	77	81	parallel
Strand 4	B	39	42	parallel
Strand 5	B	2	6	parallel
Strand 6	B	289	294	parallel
Strand 7	B	255	260	parallel
Strand 8	B	212	216	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	90	91	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	151	152	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	352	first strand
Strand 2	B	388	390	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	C	132	136	parallel
Strand 3	C	77	81	parallel
Strand 4	C	39	42	parallel
Strand 5	C	2	6	parallel
Strand 6	C	289	294	parallel
Strand 7	C	255	260	parallel
Strand 8	C	212	216	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	87	first strand
Strand 2	C	90	91	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	148	first strand
Strand 2	C	151	152	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	354	first strand
Strand 2	C	388	392	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	185	first strand
Strand 2	D	132	136	parallel
Strand 3	D	77	81	parallel
Strand 4	D	39	42	parallel
Strand 5	D	2	6	parallel
Strand 6	D	289	294	parallel
Strand 7	D	255	260	parallel
Strand 8	D	212	216	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	87	first strand
Strand 2	D	90	91	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	148	first strand
Strand 2	D	151	152	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	354	first strand
Strand 2	D	388	392	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GVB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GVB