Analysis of interatomic Contacts of Structural Units in PDB entry:
6GVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GVD entry

There is 1 chain in PDB entry 6GVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -5GLU 525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6GVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-5 0Right-handed alpha
Helix 2
AA2
A
85 90Right-handed alpha
Helix 3
AA3
A
92 97Right-handed alpha
Helix 4
AA4
A
159 176Right-handed alpha
Helix 5
AA5
A
189 194Right-handed alpha
Helix 6
AA6
A
195 197Right-handed 310
Helix 7
AA7
A
198 209Right-handed alpha
Helix 8
AA8
A
210 212Right-handed 310
Helix 9
AA9
A
239 250Right-handed alpha
Helix 10
AB1
A
267 273Right-handed alpha
Helix 11
AB2
A
274 277Right-handed 310
Helix 12
AB3
A
302 320Right-handed alpha
Helix 13
AB4
A
328 334Right-handed 310
Helix 14
AB5
A
343 360Right-handed alpha
Helix 15
AB6
A
372 376Right-handed 310
Helix 16
AB7
A
403 414Right-handed alpha
Helix 17
AB8
A
415 418Right-handed 310
Helix 18
AB9
A
439 453Right-handed alpha
Helix 19
AC1
A
462 466Right-handed 310
Helix 20
AC2
A
467 479Right-handed alpha
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There are 8 sheets in PDB entry 6GVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
2 3anti-parallel
Strand 3
A
45 52anti-parallel
Strand 4
A
131 137anti-parallel
Strand 5
A
122 128anti-parallel
Strand 6
A
101 103anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
20 29anti-parallel
Strand 3
A
32 41anti-parallel
Strand 4
A
152 156anti-parallel
Strand 5
A
111 115anti-parallel
Strand 6
A
105 108anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
20 29anti-parallel
Strand 3
A
32 41anti-parallel
Strand 4
A
143 148anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
68 72anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
381 383parallel
Strand 3
A
364 367parallel
Strand 4
A
323 326parallel
Strand 5
A
253 258parallel
Strand 6
A
216 219parallel
Strand 7
A
185 188parallel
Strand 8
A
457 459parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
293 297anti-parallel
Strand 3
A
286 290anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
283 284anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 487first strand
Strand 2
A
496 504anti-parallel
Strand 3
A
507 514anti-parallel
Strand 4
A
519 524anti-parallel
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