Analysis of interatomic Contacts of Structural Units in PDB entry:
6GVK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GVK entry

There are 2 chains in PDB entry 6GVK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1457SER 1666
B
 SER 27GLU 50
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 6GVK

There are 5 sheets in PDB entry 6GVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1514 1517first strand
Strand 2
A
1473 1479anti-parallel
Strand 3
A
1463 1470anti-parallel
Strand 4
B
44 48anti-parallel
Strand 5
A
1653 1665anti-parallel
Strand 6
A
1642 1650anti-parallel
Strand 7
A
1601 1610anti-parallel
Strand 8
A
1618 1623anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1514 1517first strand
Strand 2
A
1473 1479anti-parallel
Strand 3
A
1463 1470anti-parallel
Strand 4
B
44 48anti-parallel
Strand 5
A
1653 1665anti-parallel
Strand 6
B
29 33parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1503 1507first strand
Strand 2
A
1489 1496anti-parallel
Strand 3
A
1525 1534anti-parallel
Strand 4
A
1537 1538anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1503 1507first strand
Strand 2
A
1489 1496anti-parallel
Strand 3
A
1525 1534anti-parallel
Strand 4
A
1542 1550anti-parallel
Strand 5
A
1566 1569anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1628 1633first strand
Strand 2
A
1586 1592anti-parallel
Strand 3
A
1578 1583anti-parallel
Strand 4
B
39 40anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il