Analysis of interatomic Contacts of Structural Units in PDB entry:
6GVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GVS entry

There are 4 chains in PDB entry 6GVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 82ARG 522
B
ALA 83ARG 522
C
ALA 82ARG 522
D
ALA 83GLU 97
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are203 helices in PDB entry 6GVS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
91 107Right-handed alpha
Helix 2
AA2
A
110 127Right-handed alpha
Helix 3
AA3
A
127 143Right-handed alpha
Helix 4
AA4
A
146 161Right-handed alpha
Helix 5
AA5
A
163 167Right-handed 310
Helix 6
AA6
A
197 212Right-handed alpha
Helix 7
AA7
A
221 223Right-handed 310
Helix 8
AA8
A
224 242Right-handed alpha
Helix 9
AA9
A
256 266Right-handed alpha
Helix 10
AB1
A
277 285Right-handed alpha
Helix 11
AB2
A
308 322Right-handed alpha
Helix 12
AB3
A
323 326Right-handed 310
Helix 13
AB4
A
338 351Right-handed alpha
Helix 14
AB5
A
358 370Right-handed alpha
Helix 15
AB6
A
377 381Right-handed 310
Helix 16
AB7
A
384 392Right-handed alpha
Helix 17
AB8
A
411 416Right-handed alpha
Helix 18
AB9
A
430 442Right-handed alpha
Helix 19
AC1
A
455 467Right-handed alpha
Helix 20
AC2
A
476 482Right-handed 310
Helix 21
AC3
A
503 506Right-handed 310
Helix 22
AC4
B
91 107Right-handed alpha
Helix 23
AC5
B
110 127Right-handed alpha
Helix 24
AC6
B
127 143Right-handed alpha
Helix 25
AC7
B
146 160Right-handed alpha
Helix 26
AC8
B
163 167Right-handed 310
Helix 27
AC9
B
197 212Right-handed alpha
Helix 28
AD1
B
221 223Right-handed 310
Helix 29
AD2
B
224 242Right-handed alpha
Helix 30
AD3
B
256 266Right-handed alpha
Helix 31
AD4
B
277 285Right-handed alpha
Helix 32
AD5
B
308 322Right-handed alpha
Helix 33
AD6
B
323 326Right-handed 310
Helix 34
AD7
B
338 351Right-handed alpha
Helix 35
AD8
B
358 370Right-handed alpha
Helix 36
AD9
B
384 391Right-handed alpha
Helix 37
AE1
B
411 416Right-handed alpha
Helix 38
AE2
B
430 443Right-handed alpha
Helix 39
AE3
B
455 467Right-handed alpha
Helix 40
AE4
B
476 482Right-handed 310
Helix 41
AE5
B
504 506Right-handed 310
Helix 42
AE6
C
91 108Right-handed alpha
Helix 43
AE7
C
110 127Right-handed alpha
Helix 44
AE8
C
127 143Right-handed alpha
Helix 45
AE9
C
146 160Right-handed alpha
Helix 46
AF1
C
163 167Right-handed 310
Helix 47
AF2
C
197 212Right-handed alpha
Helix 48
AF3
C
224 242Right-handed alpha
Helix 49
AF4
C
256 266Right-handed alpha
Helix 50
AF5
C
277 285Right-handed alpha
Helix 51
AF6
C
308 322Right-handed alpha
Helix 52
AF7
C
323 326Right-handed 310
Helix 53
AF8
C
338 351Right-handed alpha
Helix 54
AF9
C
358 370Right-handed alpha
Helix 55
AG1
C
384 391Right-handed alpha
Helix 56
AG2
C
411 416Right-handed alpha
Helix 57
AG3
C
430 443Right-handed alpha
Helix 58
AG4
C
455 467Right-handed alpha
Helix 59
AG5
C
476 482Right-handed 310
Helix 60
AG6
C
503 506Right-handed 310
Helix 61
AG7
D
91 107Right-handed alpha
Helix 62
AG8
D
110 127Right-handed alpha
Helix 63
AG9
D
127 143Right-handed alpha
Helix 64
AH1
D
146 160Right-handed alpha
Helix 65
AH2
D
163 167Right-handed 310
Helix 66
AH3
D
197 212Right-handed alpha
Helix 67
AH4
D
221 223Right-handed 310
Helix 68
AH5
D
224 242Right-handed alpha
Helix 69
AH6
D
256 266Right-handed alpha
Helix 70
AH7
D
277 285Right-handed alpha
Helix 71
AH8
D
308 322Right-handed alpha
Helix 72
AH9
D
323 326Right-handed 310
Helix 73
AI1
D
338 351Right-handed alpha
Helix 74
AI2
D
358 370Right-handed alpha
Helix 75
AI3
D
384 391Right-handed alpha
Helix 76
AI4
D
411 416Right-handed alpha
Helix 77
AI5
D
430 443Right-handed alpha
Helix 78
AI6
D
455 467Right-handed alpha
Helix 79
AI7
D
476 482Right-handed 310
Helix 80
AI8
D
503 506Right-handed 310
Helix 81
AI9
E
91 107Right-handed alpha
Helix 82
AJ1
E
110 127Right-handed alpha
Helix 83
AJ2
E
127 143Right-handed alpha
Helix 84
AJ3
E
146 161Right-handed alpha
Helix 85
AJ4
E
163 167Right-handed 310
Helix 86
AJ5
E
197 212Right-handed alpha
Helix 87
AJ6
E
221 223Right-handed 310
Helix 88
AJ7
E
224 242Right-handed alpha
Helix 89
AJ8
E
256 266Right-handed alpha
Helix 90
AJ9
E
277 285Right-handed alpha
Helix 91
AK1
E
308 322Right-handed alpha
Helix 92
AK2
E
323 326Right-handed 310
Helix 93
AK3
E
338 351Right-handed alpha
Helix 94
AK4
E
358 370Right-handed alpha
Helix 95
AK5
E
384 391Right-handed alpha
Helix 96
AK6
E
411 416Right-handed alpha
Helix 97
AK7
E
430 442Right-handed alpha
Helix 98
AK8
E
455 467Right-handed alpha
Helix 99
AK9
E
476 482Right-handed 310
Helix 100
AL1
E
503 506Right-handed 310
Helix 101
AL2
F
91 107Right-handed alpha
Helix 102
AL3
F
110 126Right-handed alpha
Helix 103
AL4
F
127 143Right-handed alpha
Helix 104
AL5
F
146 160Right-handed alpha
Helix 105
AL6
F
163 167Right-handed 310
Helix 106
AL7
F
197 212Right-handed alpha
Helix 107
AL8
F
221 223Right-handed 310
Helix 108
AL9
F
224 242Right-handed alpha
Helix 109
AM1
F
256 266Right-handed alpha
Helix 110
AM2
F
277 285Right-handed alpha
Helix 111
AM3
F
308 322Right-handed alpha
Helix 112
AM4
F
323 326Right-handed 310
Helix 113
AM5
F
338 351Right-handed alpha
Helix 114
AM6
F
358 370Right-handed alpha
Helix 115
AM7
F
384 391Right-handed alpha
Helix 116
AM8
F
411 416Right-handed alpha
Helix 117
AM9
F
430 443Right-handed alpha
Helix 118
AN1
F
455 467Right-handed alpha
Helix 119
AN2
F
476 482Right-handed 310
Helix 120
AN3
F
504 506Right-handed 310
Helix 121
AN4
G
91 107Right-handed alpha
Helix 122
AN5
G
110 127Right-handed alpha
Helix 123
AN6
G
127 143Right-handed alpha
Helix 124
AN7
G
146 161Right-handed alpha
Helix 125
AN8
G
163 167Right-handed 310
Helix 126
AN9
G
197 212Right-handed alpha
Helix 127
AO1
G
221 223Right-handed 310
Helix 128
AO2
G
224 242Right-handed alpha
Helix 129
AO3
G
256 266Right-handed alpha
Helix 130
AO4
G
277 285Right-handed alpha
Helix 131
AO5
G
308 322Right-handed alpha
Helix 132
AO6
G
323 326Right-handed 310
Helix 133
AO7
G
338 351Right-handed alpha
Helix 134
AO8
G
358 370Right-handed alpha
Helix 135
AO9
G
377 381Right-handed 310
Helix 136
AP1
G
384 392Right-handed alpha
Helix 137
AP2
G
411 416Right-handed alpha
Helix 138
AP3
G
430 442Right-handed alpha
Helix 139
AP4
G
455 467Right-handed alpha
Helix 140
AP5
G
476 482Right-handed 310
Helix 141
AP6
G
503 506Right-handed 310
Helix 142
AP7
H
91 108Right-handed alpha
Helix 143
AP8
H
110 127Right-handed alpha
Helix 144
AP9
H
127 143Right-handed alpha
Helix 145
AQ1
H
146 161Right-handed alpha
Helix 146
AQ2
H
163 167Right-handed 310
Helix 147
AQ3
H
197 212Right-handed alpha
Helix 148
AQ4
H
221 223Right-handed 310
Helix 149
AQ5
H
224 242Right-handed alpha
Helix 150
AQ6
H
256 266Right-handed alpha
Helix 151
AQ7
H
277 285Right-handed alpha
Helix 152
AQ8
H
308 322Right-handed alpha
Helix 153
AQ9
H
323 326Right-handed 310
Helix 154
AR1
H
338 351Right-handed alpha
Helix 155
AR2
H
358 370Right-handed alpha
Helix 156
AR3
H
384 391Right-handed alpha
Helix 157
AR4
H
411 416Right-handed alpha
Helix 158
AR5
H
430 442Right-handed alpha
Helix 159
AR6
H
455 467Right-handed alpha
Helix 160
AR7
H
476 482Right-handed 310
Helix 161
AR8
H
503 506Right-handed 310
Helix 162
AR9
I
91 107Right-handed alpha
Helix 163
AS1
I
110 127Right-handed alpha
Helix 164
AS2
I
127 143Right-handed alpha
Helix 165
AS3
I
146 161Right-handed alpha
Helix 166
AS4
I
163 167Right-handed 310
Helix 167
AS5
I
197 212Right-handed alpha
Helix 168
AS6
I
221 223Right-handed 310
Helix 169
AS7
I
224 242Right-handed alpha
Helix 170
AS8
I
256 266Right-handed alpha
Helix 171
AS9
I
277 285Right-handed alpha
Helix 172
AT1
I
308 322Right-handed alpha
Helix 173
AT2
I
323 326Right-handed 310
Helix 174
AT3
I
338 351Right-handed alpha
Helix 175
AT4
I
358 370Right-handed alpha
Helix 176
AT5
I
377 381Right-handed 310
Helix 177
AT6
I
384 391Right-handed alpha
Helix 178
AT7
I
411 416Right-handed alpha
Helix 179
AT8
I
430 442Right-handed alpha
Helix 180
AT9
I
455 467Right-handed alpha
Helix 181
AU1
I
476 482Right-handed 310
Helix 182
AU2
I
503 506Right-handed 310
Helix 183
AU3
J
91 107Right-handed alpha
Helix 184
AU4
J
110 127Right-handed alpha
Helix 185
AU5
J
127 143Right-handed alpha
Helix 186
AU6
J
146 161Right-handed alpha
Helix 187
AU7
J
163 167Right-handed 310
Helix 188
AU8
J
197 212Right-handed alpha
Helix 189
AU9
J
221 223Right-handed 310
Helix 190
AV1
J
224 242Right-handed alpha
Helix 191
AV2
J
256 266Right-handed alpha
Helix 192
AV3
J
277 285Right-handed alpha
Helix 193
AV4
J
308 322Right-handed alpha
Helix 194
AV5
J
323 326Right-handed 310
Helix 195
AV6
J
338 351Right-handed alpha
Helix 196
AV7
J
358 370Right-handed alpha
Helix 197
AV8
J
377 381Right-handed 310
Helix 198
AV9
J
384 391Right-handed alpha
Helix 199
AW1
J
411 416Right-handed alpha
Helix 200
AW2
J
430 442Right-handed alpha
Helix 201
AW3
J
455 467Right-handed alpha
Helix 202
AW4
J
476 482Right-handed 310
Helix 203
AW5
J
503 506Right-handed 310
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There are 27 sheets in PDB entry 6GVS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
88 89first strand
Strand 2
A
249 252parallel
Strand 3
A
215 219parallel
Strand 4
A
188 192parallel
Strand 5
A
271 275parallel
Strand 6
A
290 294parallel
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There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
353 355first strand
Strand 2
B
402 406parallel
Strand 3
B
422 428parallel
Strand 4
B
333 337parallel
Strand 5
B
300 303parallel
Strand 6
B
448 452parallel
Strand 7
B
470 473parallel
Strand 8
A
508 516parallel
Strand 9
A
177 185anti-parallel
Strand 10
A
169 174anti-parallel
Strand 11
D
169 174anti-parallel
Strand 12
D
177 185anti-parallel
Strand 13
D
508 516anti-parallel
Strand 14
C
470 473parallel
Strand 15
C
448 452parallel
Strand 16
C
300 303parallel
Strand 17
C
333 337parallel
Strand 18
C
422 428parallel
Strand 19
C
402 406parallel
Strand 20
C
353 355parallel
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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
353 355first strand
Strand 2
A
402 406parallel
Strand 3
A
422 428parallel
Strand 4
A
333 337parallel
Strand 5
A
300 303parallel
Strand 6
A
448 452parallel
Strand 7
A
470 473parallel
Strand 8
B
508 516parallel
Strand 9
B
177 185anti-parallel
Strand 10
B
169 174anti-parallel
Strand 11
C
170 174anti-parallel
Strand 12
C
177 185anti-parallel
Strand 13
C
508 516anti-parallel
Strand 14
D
470 473parallel
Strand 15
D
448 452parallel
Strand 16
D
300 303parallel
Strand 17
D
333 337parallel
Strand 18
D
422 428parallel
Strand 19
D
402 406parallel
Strand 20
D
353 355parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
493 494first strand
Strand 2
A
500 501anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
88 89first strand
Strand 2
B
249 252parallel
Strand 3
B
215 219parallel
Strand 4
B
188 192parallel
Strand 5
B
269 275parallel
Strand 6
B
290 294parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
493 494first strand
Strand 2
B
500 501anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
88 89first strand
Strand 2
C
249 252parallel
Strand 3
C
215 218parallel
Strand 4
C
188 192parallel
Strand 5
C
269 275parallel
Strand 6
C
291 294parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
493 494first strand
Strand 2
C
500 501anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
88 89first strand
Strand 2
D
249 252parallel
Strand 3
D
215 218parallel
Strand 4
D
188 192parallel
Strand 5
D
271 275parallel
Strand 6
D
290 294parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
493 494first strand
Strand 2
D
500 501anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
88 89first strand
Strand 2
E
249 252parallel
Strand 3
E
215 218parallel
Strand 4
E
188 192parallel
Strand 5
E
269 275parallel
Strand 6
E
290 294parallel
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There are 20 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
353 355first strand
Strand 2
F
402 406parallel
Strand 3
F
422 428parallel
Strand 4
F
333 337parallel
Strand 5
F
300 303parallel
Strand 6
F
448 452parallel
Strand 7
F
470 473parallel
Strand 8
E
508 516parallel
Strand 9
E
177 185anti-parallel
Strand 10
E
169 174anti-parallel
Strand 11
H
170 174anti-parallel
Strand 12
H
177 185anti-parallel
Strand 13
H
508 516anti-parallel
Strand 14
G
470 473parallel
Strand 15
G
448 452parallel
Strand 16
G
300 303parallel
Strand 17
G
333 337parallel
Strand 18
G
422 428parallel
Strand 19
G
402 406parallel
Strand 20
G
353 355parallel
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There are 20 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
353 355first strand
Strand 2
E
402 406parallel
Strand 3
E
422 428parallel
Strand 4
E
333 337parallel
Strand 5
E
300 303parallel
Strand 6
E
448 452parallel
Strand 7
E
470 473parallel
Strand 8
F
508 516parallel
Strand 9
F
177 185anti-parallel
Strand 10
F
169 174anti-parallel
Strand 11
G
169 174anti-parallel
Strand 12
G
177 185anti-parallel
Strand 13
G
508 516anti-parallel
Strand 14
H
470 473parallel
Strand 15
H
448 452parallel
Strand 16
H
300 303parallel
Strand 17
H
333 337parallel
Strand 18
H
422 428parallel
Strand 19
H
402 406parallel
Strand 20
H
353 355parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
493 494first strand
Strand 2
E
500 501anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
88 89first strand
Strand 2
F
249 252parallel
Strand 3
F
215 218parallel
Strand 4
F
188 192parallel
Strand 5
F
271 275parallel
Strand 6
F
290 294parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
493 494first strand
Strand 2
F
500 501anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
88 89first strand
Strand 2
G
249 252parallel
Strand 3
G
215 219parallel
Strand 4
G
188 192parallel
Strand 5
G
269 275parallel
Strand 6
G
290 294parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
493 494first strand
Strand 2
G
500 501anti-parallel
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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
88 89first strand
Strand 2
H
249 252parallel
Strand 3
H
215 218parallel
Strand 4
H
188 192parallel
Strand 5
H
271 275parallel
Strand 6
H
290 294parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
493 494first strand
Strand 2
H
500 501anti-parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
88 89first strand
Strand 2
I
249 252parallel
Strand 3
I
215 219parallel
Strand 4
I
188 192parallel
Strand 5
I
269 275parallel
Strand 6
I
290 294parallel
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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
508 516first strand
Strand 2
I
177 185anti-parallel
Strand 3
I
169 174anti-parallel
Strand 4
J
169 174anti-parallel
Strand 5
J
177 185anti-parallel
Strand 6
J
508 516anti-parallel
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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
353 355first strand
Strand 2
I
402 406parallel
Strand 3
I
422 428parallel
Strand 4
I
333 337parallel
Strand 5
I
300 303parallel
Strand 6
I
448 452parallel
Strand 7
I
470 473parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
493 494first strand
Strand 2
I
500 501anti-parallel
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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
88 89first strand
Strand 2
J
249 252parallel
Strand 3
J
215 218parallel
Strand 4
J
188 192parallel
Strand 5
J
269 275parallel
Strand 6
J
290 294parallel
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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
353 355first strand
Strand 2
J
402 406parallel
Strand 3
J
422 428parallel
Strand 4
J
333 337parallel
Strand 5
J
300 303parallel
Strand 6
J
448 452parallel
Strand 7
J
470 473parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
493 494first strand
Strand 2
J
500 501anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il