Analysis of interatomic Contacts of Structural Units in PDB entry:
6GVW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GVW entry

There are 3 chains in PDB entry 6GVW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	LEU 324
B	ALA 8	GLU 291
C	MET 1	ARG 55

There are 70 helices in PDB entry 6GVW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	25	Right-handed alpha
Helix 2	AA2	A	81	91	Right-handed alpha
Helix 3	AA3	A	111	125	Right-handed alpha
Helix 4	AA4	A	188	198	Right-handed alpha
Helix 5	AA5	A	209	262	Right-handed alpha
Helix 6	AA6	A	276	287	Right-handed alpha
Helix 7	AA7	B	16	27	Right-handed alpha
Helix 8	AA8	B	93	112	Right-handed alpha
Helix 9	AA9	B	132	144	Right-handed alpha
Helix 10	AB1	B	200	208	Right-handed alpha
Helix 11	AB2	B	208	226	Right-handed alpha
Helix 12	AB3	B	232	254	Right-handed alpha
Helix 13	AB4	B	254	290	Right-handed alpha
Helix 14	AB5	C	2	7	Right-handed alpha
Helix 15	AB6	C	14	25	Right-handed alpha
Helix 16	AB7	C	99	104	Right-handed alpha
Helix 17	AB8	C	111	134	Right-handed alpha
Helix 18	AB9	C	135	137	Right-handed 310
Helix 19	AC1	C	138	147	Right-handed alpha
Helix 20	AC2	C	148	153	Right-handed alpha
Helix 21	AC3	C	222	229	Right-handed alpha
Helix 22	AC4	C	231	235	Right-handed 310
Helix 23	AC5	C	245	283	Right-handed alpha
Helix 24	AC6	C	354	381	Right-handed alpha
Helix 25	AC7	D	106	111	Right-handed 310
Helix 26	AC8	D	123	142	Right-handed alpha
Helix 27	AC9	D	167	175	Right-handed alpha
Helix 28	AD1	D	186	198	Right-handed alpha
Helix 29	AD2	D	233	242	Right-handed alpha
Helix 30	AD3	D	254	259	Right-handed alpha
Helix 31	AD4	D	261	274	Right-handed alpha
Helix 32	AD5	D	292	302	Right-handed alpha
Helix 33	AD6	D	311	315	Right-handed 310
Helix 34	AD7	E	288	312	Right-handed alpha
Helix 35	AD8	F	12	25	Right-handed alpha
Helix 36	AD9	F	81	91	Right-handed alpha
Helix 37	AE1	F	111	126	Right-handed alpha
Helix 38	AE2	F	188	198	Right-handed alpha
Helix 39	AE3	F	209	262	Right-handed alpha
Helix 40	AE4	F	276	286	Right-handed alpha
Helix 41	AE5	F	287	294	Right-handed 310
Helix 42	AE6	G	16	27	Right-handed alpha
Helix 43	AE7	G	93	112	Right-handed alpha
Helix 44	AE8	G	132	146	Right-handed alpha
Helix 45	AE9	G	200	208	Right-handed alpha
Helix 46	AF1	G	208	228	Right-handed alpha
Helix 47	AF2	G	232	254	Right-handed alpha
Helix 48	AF3	G	254	289	Right-handed alpha
Helix 49	AF4	H	2	7	Right-handed alpha
Helix 50	AF5	H	11	13	Right-handed 310
Helix 51	AF6	H	14	25	Right-handed alpha
Helix 52	AF7	H	99	104	Right-handed alpha
Helix 53	AF8	H	111	133	Right-handed alpha
Helix 54	AF9	H	138	147	Right-handed alpha
Helix 55	AG1	H	148	153	Right-handed alpha
Helix 56	AG2	H	180	184	Right-handed 310
Helix 57	AG3	H	222	230	Right-handed alpha
Helix 58	AG4	H	231	234	Right-handed 310
Helix 59	AG5	H	245	283	Right-handed alpha
Helix 60	AG6	H	354	381	Right-handed alpha
Helix 61	AG7	I	106	111	Right-handed 310
Helix 62	AG8	I	123	142	Right-handed alpha
Helix 63	AG9	I	167	175	Right-handed alpha
Helix 64	AH1	I	186	198	Right-handed alpha
Helix 65	AH2	I	233	242	Right-handed alpha
Helix 66	AH3	I	254	259	Right-handed alpha
Helix 67	AH4	I	261	273	Right-handed alpha
Helix 68	AH5	I	292	302	Right-handed alpha
Helix 69	AH6	I	311	315	Right-handed 310
Helix 70	AH7	J	288	312	Right-handed alpha

There are 16 sheets in PDB entry 6GVW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	11	first strand
Strand 2	A	166	169	parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	164	first strand
Strand 2	A	146	158	anti-parallel
Strand 3	A	131	140	anti-parallel
Strand 4	A	96	102	parallel
Strand 5	A	29	41	anti-parallel
Strand 6	A	55	67	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	194	first strand
Strand 2	B	11	15	parallel
Strand 3	B	69	80	parallel
Strand 4	B	35	45	anti-parallel
Strand 5	B	116	124	anti-parallel
Strand 6	B	150	155	parallel
Strand 7	B	169	176	anti-parallel
Strand 8	B	185	188	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	62	first strand
Strand 2	C	65	72	anti-parallel
Strand 3	C	83	85	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	159	first strand
Strand 2	C	171	176	anti-parallel
Strand 3	C	201	207	anti-parallel
Strand 4	C	215	221	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	344	first strand
Strand 2	C	324	329	anti-parallel
Strand 3	C	306	313	anti-parallel
Strand 4	C	296	303	anti-parallel
Strand 5	C	286	289	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	164	first strand
Strand 2	D	147	153	anti-parallel
Strand 3	D	97	104	parallel
Strand 4	D	214	221	parallel
Strand 5	D	245	253	parallel
Strand 6	D	283	287	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	116	first strand
Strand 2	D	120	122	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	11	first strand
Strand 2	F	166	169	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	160	164	first strand
Strand 2	F	147	158	anti-parallel
Strand 3	F	131	139	anti-parallel
Strand 4	F	96	102	parallel
Strand 5	F	29	45	anti-parallel
Strand 6	F	51	66	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	191	194	first strand
Strand 2	G	11	15	parallel
Strand 3	G	69	80	parallel
Strand 4	G	35	45	anti-parallel
Strand 5	G	116	124	anti-parallel
Strand 6	G	150	155	parallel
Strand 7	G	169	177	anti-parallel
Strand 8	G	184	188	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	62	first strand
Strand 2	H	65	72	anti-parallel
Strand 3	H	83	85	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	159	first strand
Strand 2	H	171	176	anti-parallel
Strand 3	H	201	207	anti-parallel
Strand 4	H	215	221	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	341	344	first strand
Strand 2	H	324	328	anti-parallel
Strand 3	H	306	313	anti-parallel
Strand 4	H	296	303	anti-parallel
Strand 5	H	286	289	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	157	159	first strand
Strand 2	I	147	153	anti-parallel
Strand 3	I	96	104	parallel
Strand 4	I	213	221	parallel
Strand 5	I	245	253	parallel
Strand 6	I	283	287	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	148	150	first strand
Strand 2	I	161	164	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GVW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GVW