Analysis of interatomic Contacts of Structural Units in PDB entry:
6GVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GVX entry

There are 2 chains in PDB entry 6GVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -3ARG 333
B
 PRO -3SER 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6GVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
6 9Right-handed 310
Helix 3
AA3
A
51 64Right-handed alpha
Helix 4
AA4
A
94 101Right-handed alpha
Helix 5
AA5
A
105 126Right-handed alpha
Helix 6
AA6
A
171 175Right-handed 310
Helix 7
AA7
A
176 182Right-handed alpha
Helix 8
AA8
A
188 205Right-handed alpha
Helix 9
AA9
A
213 224Right-handed alpha
Helix 10
AB1
A
233 244Right-handed alpha
Helix 11
AB2
A
253 259Right-handed alpha
Helix 12
AB3
A
260 265Right-handed alpha
Helix 13
AB4
A
283 288Right-handed alpha
Helix 14
AB5
A
299 306Right-handed alpha
Helix 15
AB6
A
311 327Right-handed alpha
Helix 16
AB7
B
1 5Right-handed 310
Helix 17
AB8
B
6 9Right-handed 310
Helix 18
AB9
B
50 64Right-handed alpha
Helix 19
AC1
B
94 102Right-handed alpha
Helix 20
AC2
B
105 126Right-handed alpha
Helix 21
AC3
B
134 136Right-handed 310
Helix 22
AC4
B
171 175Right-handed 310
Helix 23
AC5
B
188 205Right-handed alpha
Helix 24
AC6
B
213 224Right-handed alpha
Helix 25
AC7
B
233 244Right-handed alpha
Helix 26
AC8
B
253 259Right-handed alpha
Helix 27
AC9
B
260 265Right-handed alpha
Helix 28
AD1
B
283 294Right-handed alpha
Helix 29
AD2
B
297 306Right-handed alpha
Helix 30
AD3
B
311 326Right-handed alpha
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There are 4 sheets in PDB entry 6GVX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 18first strand
Strand 2
A
24 30anti-parallel
Strand 3
A
36 43anti-parallel
Strand 4
A
81 87anti-parallel
Strand 5
A
72 77anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
138 140anti-parallel
Strand 3
A
146 148anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 18first strand
Strand 2
B
24 30anti-parallel
Strand 3
B
36 43anti-parallel
Strand 4
B
81 87anti-parallel
Strand 5
B
72 77anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
138 140anti-parallel
Strand 3
B
146 148anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il